Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China

Abies chensiensis Van Tiegh. (Pinaceae) is a rare and endangered endemic conifer in China. In this study, using the Illumina sequencing platform, we firstly characterized its whole plastid genome sequence. Our study revealed that A. chensiensis have a typical plastid genome of 121,498 bp in length,...

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Autores principales: Liu, Mi-Li, Bai, Ji-Qing, Dong, Wan-Lin, Wang, Ruo-Nan, Dong, Peng-Bin, Wang, Ning-, Liu, Hong-Yan, Fang, Min-Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800501/
https://www.ncbi.nlm.nih.gov/pubmed/33474445
http://dx.doi.org/10.1080/23802359.2018.1521312
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author Liu, Mi-Li
Bai, Ji-Qing
Dong, Wan-Lin
Wang, Ruo-Nan
Dong, Peng-Bin
Wang, Ning-
Liu, Hong-Yan
Fang, Min-Feng
author_facet Liu, Mi-Li
Bai, Ji-Qing
Dong, Wan-Lin
Wang, Ruo-Nan
Dong, Peng-Bin
Wang, Ning-
Liu, Hong-Yan
Fang, Min-Feng
author_sort Liu, Mi-Li
collection PubMed
description Abies chensiensis Van Tiegh. (Pinaceae) is a rare and endangered endemic conifer in China. In this study, using the Illumina sequencing platform, we firstly characterized its whole plastid genome sequence. Our study revealed that A. chensiensis have a typical plastid genome of 121,498 bp in length, comprised of a large single copy region of 76,484 bp, a small single copy region of 42,654 bp and two inverted repeat regions of 1180 bp. A total of 113 genes, 74 protein-coding genes, 35 tRNA, and 4 rRNA genes were identified. The phylogenetic analysis indicated that A. chensiensis was placed as a sister to the congeneric A. sibirica.
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spelling pubmed-78005012021-01-19 Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China Liu, Mi-Li Bai, Ji-Qing Dong, Wan-Lin Wang, Ruo-Nan Dong, Peng-Bin Wang, Ning- Liu, Hong-Yan Fang, Min-Feng Mitochondrial DNA B Resour Mitogenome Announcement Abies chensiensis Van Tiegh. (Pinaceae) is a rare and endangered endemic conifer in China. In this study, using the Illumina sequencing platform, we firstly characterized its whole plastid genome sequence. Our study revealed that A. chensiensis have a typical plastid genome of 121,498 bp in length, comprised of a large single copy region of 76,484 bp, a small single copy region of 42,654 bp and two inverted repeat regions of 1180 bp. A total of 113 genes, 74 protein-coding genes, 35 tRNA, and 4 rRNA genes were identified. The phylogenetic analysis indicated that A. chensiensis was placed as a sister to the congeneric A. sibirica. Taylor & Francis 2018-10-08 /pmc/articles/PMC7800501/ /pubmed/33474445 http://dx.doi.org/10.1080/23802359.2018.1521312 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Liu, Mi-Li
Bai, Ji-Qing
Dong, Wan-Lin
Wang, Ruo-Nan
Dong, Peng-Bin
Wang, Ning-
Liu, Hong-Yan
Fang, Min-Feng
Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China
title Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China
title_full Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China
title_fullStr Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China
title_full_unstemmed Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China
title_short Characterization of the whole plastid genome sequence of Abies chensiensis (Pinaceae), an endangered endemic conifer in China
title_sort characterization of the whole plastid genome sequence of abies chensiensis (pinaceae), an endangered endemic conifer in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800501/
https://www.ncbi.nlm.nih.gov/pubmed/33474445
http://dx.doi.org/10.1080/23802359.2018.1521312
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