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Complete chloroplast genome sequence of Parnassia brevistyla (Celastraceae) and phylogenetic analysis with related species

The taxonomic status of Parnassia has been widely discussed, which has been placed in more than five families, Parnassiaceae, Droseraceae, Saxifragaceae, and Celastraceae. Due to the lack of reliable genetic data, we sequenced and analyzed P. brevistyla chloroplast genome for future genetic study. T...

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Autores principales: Xia, Mingze, Zhang, Faqi, Rao, Hua, Chi, Xiaofeng, Khan, Gulzar, Zhang, Yu, Yu, Jingya, Chen, Shilong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800561/
https://www.ncbi.nlm.nih.gov/pubmed/33474459
http://dx.doi.org/10.1080/23802359.2018.1524725
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author Xia, Mingze
Zhang, Faqi
Rao, Hua
Chi, Xiaofeng
Khan, Gulzar
Zhang, Yu
Yu, Jingya
Chen, Shilong
author_facet Xia, Mingze
Zhang, Faqi
Rao, Hua
Chi, Xiaofeng
Khan, Gulzar
Zhang, Yu
Yu, Jingya
Chen, Shilong
author_sort Xia, Mingze
collection PubMed
description The taxonomic status of Parnassia has been widely discussed, which has been placed in more than five families, Parnassiaceae, Droseraceae, Saxifragaceae, and Celastraceae. Due to the lack of reliable genetic data, we sequenced and analyzed P. brevistyla chloroplast genome for future genetic study. The complete chloroplast genomes of Parnassia brevistyla was sequenced with NovaSeq 6000. The full length of P. brevistyla chloroplast genomes is 151,728 bp. A total of 114 unique genes, including 30 tRNA genes, four rRNA genes, and 80 protein-coding genes were found in the chloroplast genome. Using the whole chloroplast genome sequences alignment of 10 species from Celastraceae and Saxifragaceae, the phylogenetic relationship was built. The phylogenetic position of P. brevistyla was closely clustered with Celastraceae. The complete chloroplast genome of P. brevistyla provides utility information for further research of phylogenetic relationship and taxonomic status of Parnassia.
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spelling pubmed-78005612021-01-19 Complete chloroplast genome sequence of Parnassia brevistyla (Celastraceae) and phylogenetic analysis with related species Xia, Mingze Zhang, Faqi Rao, Hua Chi, Xiaofeng Khan, Gulzar Zhang, Yu Yu, Jingya Chen, Shilong Mitochondrial DNA B Resour MitoGenome Announcement The taxonomic status of Parnassia has been widely discussed, which has been placed in more than five families, Parnassiaceae, Droseraceae, Saxifragaceae, and Celastraceae. Due to the lack of reliable genetic data, we sequenced and analyzed P. brevistyla chloroplast genome for future genetic study. The complete chloroplast genomes of Parnassia brevistyla was sequenced with NovaSeq 6000. The full length of P. brevistyla chloroplast genomes is 151,728 bp. A total of 114 unique genes, including 30 tRNA genes, four rRNA genes, and 80 protein-coding genes were found in the chloroplast genome. Using the whole chloroplast genome sequences alignment of 10 species from Celastraceae and Saxifragaceae, the phylogenetic relationship was built. The phylogenetic position of P. brevistyla was closely clustered with Celastraceae. The complete chloroplast genome of P. brevistyla provides utility information for further research of phylogenetic relationship and taxonomic status of Parnassia. Taylor & Francis 2018-10-26 /pmc/articles/PMC7800561/ /pubmed/33474459 http://dx.doi.org/10.1080/23802359.2018.1524725 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle MitoGenome Announcement
Xia, Mingze
Zhang, Faqi
Rao, Hua
Chi, Xiaofeng
Khan, Gulzar
Zhang, Yu
Yu, Jingya
Chen, Shilong
Complete chloroplast genome sequence of Parnassia brevistyla (Celastraceae) and phylogenetic analysis with related species
title Complete chloroplast genome sequence of Parnassia brevistyla (Celastraceae) and phylogenetic analysis with related species
title_full Complete chloroplast genome sequence of Parnassia brevistyla (Celastraceae) and phylogenetic analysis with related species
title_fullStr Complete chloroplast genome sequence of Parnassia brevistyla (Celastraceae) and phylogenetic analysis with related species
title_full_unstemmed Complete chloroplast genome sequence of Parnassia brevistyla (Celastraceae) and phylogenetic analysis with related species
title_short Complete chloroplast genome sequence of Parnassia brevistyla (Celastraceae) and phylogenetic analysis with related species
title_sort complete chloroplast genome sequence of parnassia brevistyla (celastraceae) and phylogenetic analysis with related species
topic MitoGenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800561/
https://www.ncbi.nlm.nih.gov/pubmed/33474459
http://dx.doi.org/10.1080/23802359.2018.1524725
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