Cargando…

Complete plastome sequence of Nepenthes mirabilis (Nepenthaceae): a “vulnerable” herb in China

Nepenthes mirabilis (Nepenthaceae) is an erect or climbing (0.5–2 m tall) herb distributed in Africa (Madagascar), south and southeast Asia, North Australia and Pacific Islands (Caroline Islands). There is only one species in China. It grows in wet and sandy soils places throughout forests, grasslan...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhu, Zhi-Xin, Wang, Jian-Hua, Chen, Chao-Rui, Zhao, Kun-Kun, Wang, Hua-Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800567/
https://www.ncbi.nlm.nih.gov/pubmed/33474302
http://dx.doi.org/10.1080/23802359.2018.1483765
_version_ 1783635384820826112
author Zhu, Zhi-Xin
Wang, Jian-Hua
Chen, Chao-Rui
Zhao, Kun-Kun
Wang, Hua-Feng
author_facet Zhu, Zhi-Xin
Wang, Jian-Hua
Chen, Chao-Rui
Zhao, Kun-Kun
Wang, Hua-Feng
author_sort Zhu, Zhi-Xin
collection PubMed
description Nepenthes mirabilis (Nepenthaceae) is an erect or climbing (0.5–2 m tall) herb distributed in Africa (Madagascar), south and southeast Asia, North Australia and Pacific Islands (Caroline Islands). There is only one species in China. It grows in wet and sandy soils places throughout forests, grasslands, swamps, mountains, roadsides, wastelands having altitudes that sea level to 400 m. It has been ranked as a VU (Vulnerable) species in China. Here we report and characterize the complete plastid genome sequence of N. mirabilis in an effort to provide genomic resources useful for its conservation. The complete plastome is 155,755 bp in length and contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,415 bp, a Large Single-Copy (LSC) region of 84,997 bp and a Small Single-Copy (SSC) region of 17,928 bp. The plastome contains 113 genes, consisting of 77 unique protein-coding genes, three pseudogenes, 29 unique tRNA genes, and four unique rRNA genes. The overall A/T content in the plastome of N. mirabilis is 62.8%. Phylogenetic analyses were performed using the entire plastome, including spacers, introns, etc., and we determined that N. mirabilis 32 and Dionaea muscipula were closely related. The complete plastome sequence of N. 33 mirabilis will provide a useful resource for the conservation genetics of this species as 34 well as for the phylogenetic studies in Caryophyllales.
format Online
Article
Text
id pubmed-7800567
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78005672021-01-19 Complete plastome sequence of Nepenthes mirabilis (Nepenthaceae): a “vulnerable” herb in China Zhu, Zhi-Xin Wang, Jian-Hua Chen, Chao-Rui Zhao, Kun-Kun Wang, Hua-Feng Mitochondrial DNA B Resour Mitogenome Announcement Nepenthes mirabilis (Nepenthaceae) is an erect or climbing (0.5–2 m tall) herb distributed in Africa (Madagascar), south and southeast Asia, North Australia and Pacific Islands (Caroline Islands). There is only one species in China. It grows in wet and sandy soils places throughout forests, grasslands, swamps, mountains, roadsides, wastelands having altitudes that sea level to 400 m. It has been ranked as a VU (Vulnerable) species in China. Here we report and characterize the complete plastid genome sequence of N. mirabilis in an effort to provide genomic resources useful for its conservation. The complete plastome is 155,755 bp in length and contains the typical structure and gene content of angiosperm plastomes, including two Inverted Repeat (IR) regions of 26,415 bp, a Large Single-Copy (LSC) region of 84,997 bp and a Small Single-Copy (SSC) region of 17,928 bp. The plastome contains 113 genes, consisting of 77 unique protein-coding genes, three pseudogenes, 29 unique tRNA genes, and four unique rRNA genes. The overall A/T content in the plastome of N. mirabilis is 62.8%. Phylogenetic analyses were performed using the entire plastome, including spacers, introns, etc., and we determined that N. mirabilis 32 and Dionaea muscipula were closely related. The complete plastome sequence of N. 33 mirabilis will provide a useful resource for the conservation genetics of this species as 34 well as for the phylogenetic studies in Caryophyllales. Taylor & Francis 2018-07-03 /pmc/articles/PMC7800567/ /pubmed/33474302 http://dx.doi.org/10.1080/23802359.2018.1483765 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhu, Zhi-Xin
Wang, Jian-Hua
Chen, Chao-Rui
Zhao, Kun-Kun
Wang, Hua-Feng
Complete plastome sequence of Nepenthes mirabilis (Nepenthaceae): a “vulnerable” herb in China
title Complete plastome sequence of Nepenthes mirabilis (Nepenthaceae): a “vulnerable” herb in China
title_full Complete plastome sequence of Nepenthes mirabilis (Nepenthaceae): a “vulnerable” herb in China
title_fullStr Complete plastome sequence of Nepenthes mirabilis (Nepenthaceae): a “vulnerable” herb in China
title_full_unstemmed Complete plastome sequence of Nepenthes mirabilis (Nepenthaceae): a “vulnerable” herb in China
title_short Complete plastome sequence of Nepenthes mirabilis (Nepenthaceae): a “vulnerable” herb in China
title_sort complete plastome sequence of nepenthes mirabilis (nepenthaceae): a “vulnerable” herb in china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800567/
https://www.ncbi.nlm.nih.gov/pubmed/33474302
http://dx.doi.org/10.1080/23802359.2018.1483765
work_keys_str_mv AT zhuzhixin completeplastomesequenceofnepenthesmirabilisnepenthaceaeavulnerableherbinchina
AT wangjianhua completeplastomesequenceofnepenthesmirabilisnepenthaceaeavulnerableherbinchina
AT chenchaorui completeplastomesequenceofnepenthesmirabilisnepenthaceaeavulnerableherbinchina
AT zhaokunkun completeplastomesequenceofnepenthesmirabilisnepenthaceaeavulnerableherbinchina
AT wanghuafeng completeplastomesequenceofnepenthesmirabilisnepenthaceaeavulnerableherbinchina