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Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae)
Ligustrum lucidum is a species of privet native to the southern half of China. It is often used as an ornamental tree, sometimes as a cultivar. In present study, we reported the Ligustrum lucidum chloroplast (cp) genome. The total chloroplast genome size of L. lucidum was 154,793 bp. In total, 124 g...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800634/ https://www.ncbi.nlm.nih.gov/pubmed/33474345 http://dx.doi.org/10.1080/23802359.2018.1501298 |
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author | Wang, Rui-Hong Gao, Jing Li, Meng-Di Wu, Xue Shen, Chao Wu, Jun-Jie Li, Ya-Qian Jin, Yong-Hui Qi, Zhe-Chen Liang, Zong-Suo |
author_facet | Wang, Rui-Hong Gao, Jing Li, Meng-Di Wu, Xue Shen, Chao Wu, Jun-Jie Li, Ya-Qian Jin, Yong-Hui Qi, Zhe-Chen Liang, Zong-Suo |
author_sort | Wang, Rui-Hong |
collection | PubMed |
description | Ligustrum lucidum is a species of privet native to the southern half of China. It is often used as an ornamental tree, sometimes as a cultivar. In present study, we reported the Ligustrum lucidum chloroplast (cp) genome. The total chloroplast genome size of L. lucidum was 154,793 bp. In total, 124 genes were identified, including 81 protein-coding genes, 8 rRNA genes, and 35 tRNA genes. Twenty genes contained introns (clpP and ycf3 contained two introns) and 17 genes had two copies. The overall GC content of this genome was 38.2%. A further phylogenomic analysis of Oleaceae, including 21 taxa, was conducted for the placement of genus Ligustrum. The complete plastome of L. lucidum will provide a valuable resource for further genetic conservation, phylogenomic, and evolution studies of the genus and the family. |
format | Online Article Text |
id | pubmed-7800634 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78006342021-01-19 Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae) Wang, Rui-Hong Gao, Jing Li, Meng-Di Wu, Xue Shen, Chao Wu, Jun-Jie Li, Ya-Qian Jin, Yong-Hui Qi, Zhe-Chen Liang, Zong-Suo Mitochondrial DNA B Resour Mitogenome Announcement Ligustrum lucidum is a species of privet native to the southern half of China. It is often used as an ornamental tree, sometimes as a cultivar. In present study, we reported the Ligustrum lucidum chloroplast (cp) genome. The total chloroplast genome size of L. lucidum was 154,793 bp. In total, 124 genes were identified, including 81 protein-coding genes, 8 rRNA genes, and 35 tRNA genes. Twenty genes contained introns (clpP and ycf3 contained two introns) and 17 genes had two copies. The overall GC content of this genome was 38.2%. A further phylogenomic analysis of Oleaceae, including 21 taxa, was conducted for the placement of genus Ligustrum. The complete plastome of L. lucidum will provide a valuable resource for further genetic conservation, phylogenomic, and evolution studies of the genus and the family. Taylor & Francis 2018-08-17 /pmc/articles/PMC7800634/ /pubmed/33474345 http://dx.doi.org/10.1080/23802359.2018.1501298 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Rui-Hong Gao, Jing Li, Meng-Di Wu, Xue Shen, Chao Wu, Jun-Jie Li, Ya-Qian Jin, Yong-Hui Qi, Zhe-Chen Liang, Zong-Suo Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae) |
title | Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae) |
title_full | Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae) |
title_fullStr | Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae) |
title_full_unstemmed | Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae) |
title_short | Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae) |
title_sort | characterization of the complete chloroplast genome of chinese privet ligustrum lucidum (oleaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800634/ https://www.ncbi.nlm.nih.gov/pubmed/33474345 http://dx.doi.org/10.1080/23802359.2018.1501298 |
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