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Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae)

Ligustrum lucidum is a species of privet native to the southern half of China. It is often used as an ornamental tree, sometimes as a cultivar. In present study, we reported the Ligustrum lucidum chloroplast (cp) genome. The total chloroplast genome size of L. lucidum was 154,793 bp. In total, 124 g...

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Autores principales: Wang, Rui-Hong, Gao, Jing, Li, Meng-Di, Wu, Xue, Shen, Chao, Wu, Jun-Jie, Li, Ya-Qian, Jin, Yong-Hui, Qi, Zhe-Chen, Liang, Zong-Suo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800634/
https://www.ncbi.nlm.nih.gov/pubmed/33474345
http://dx.doi.org/10.1080/23802359.2018.1501298
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author Wang, Rui-Hong
Gao, Jing
Li, Meng-Di
Wu, Xue
Shen, Chao
Wu, Jun-Jie
Li, Ya-Qian
Jin, Yong-Hui
Qi, Zhe-Chen
Liang, Zong-Suo
author_facet Wang, Rui-Hong
Gao, Jing
Li, Meng-Di
Wu, Xue
Shen, Chao
Wu, Jun-Jie
Li, Ya-Qian
Jin, Yong-Hui
Qi, Zhe-Chen
Liang, Zong-Suo
author_sort Wang, Rui-Hong
collection PubMed
description Ligustrum lucidum is a species of privet native to the southern half of China. It is often used as an ornamental tree, sometimes as a cultivar. In present study, we reported the Ligustrum lucidum chloroplast (cp) genome. The total chloroplast genome size of L. lucidum was 154,793 bp. In total, 124 genes were identified, including 81 protein-coding genes, 8 rRNA genes, and 35 tRNA genes. Twenty genes contained introns (clpP and ycf3 contained two introns) and 17 genes had two copies. The overall GC content of this genome was 38.2%. A further phylogenomic analysis of Oleaceae, including 21 taxa, was conducted for the placement of genus Ligustrum. The complete plastome of L. lucidum will provide a valuable resource for further genetic conservation, phylogenomic, and evolution studies of the genus and the family.
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spelling pubmed-78006342021-01-19 Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae) Wang, Rui-Hong Gao, Jing Li, Meng-Di Wu, Xue Shen, Chao Wu, Jun-Jie Li, Ya-Qian Jin, Yong-Hui Qi, Zhe-Chen Liang, Zong-Suo Mitochondrial DNA B Resour Mitogenome Announcement Ligustrum lucidum is a species of privet native to the southern half of China. It is often used as an ornamental tree, sometimes as a cultivar. In present study, we reported the Ligustrum lucidum chloroplast (cp) genome. The total chloroplast genome size of L. lucidum was 154,793 bp. In total, 124 genes were identified, including 81 protein-coding genes, 8 rRNA genes, and 35 tRNA genes. Twenty genes contained introns (clpP and ycf3 contained two introns) and 17 genes had two copies. The overall GC content of this genome was 38.2%. A further phylogenomic analysis of Oleaceae, including 21 taxa, was conducted for the placement of genus Ligustrum. The complete plastome of L. lucidum will provide a valuable resource for further genetic conservation, phylogenomic, and evolution studies of the genus and the family. Taylor & Francis 2018-08-17 /pmc/articles/PMC7800634/ /pubmed/33474345 http://dx.doi.org/10.1080/23802359.2018.1501298 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Rui-Hong
Gao, Jing
Li, Meng-Di
Wu, Xue
Shen, Chao
Wu, Jun-Jie
Li, Ya-Qian
Jin, Yong-Hui
Qi, Zhe-Chen
Liang, Zong-Suo
Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae)
title Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae)
title_full Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae)
title_fullStr Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae)
title_full_unstemmed Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae)
title_short Characterization of the complete chloroplast genome of Chinese privet Ligustrum lucidum (Oleaceae)
title_sort characterization of the complete chloroplast genome of chinese privet ligustrum lucidum (oleaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800634/
https://www.ncbi.nlm.nih.gov/pubmed/33474345
http://dx.doi.org/10.1080/23802359.2018.1501298
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