Characterization of the chloroplast genome of a rare species in China, Lilium martagon var. pilosiusculum

Lilium martagon var. pilosiusculum is an endangered species with high ornamental value in Xinjiang province (China). In this study, we reported a complete chloroplast genome of L. martagon var. pilosiusculum, which was de novo assembled using the next-generation sequencing data. The complete chlorop...

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Detalles Bibliográficos
Autores principales: Zhou, Yanping, Bi, Yu, Yan, Qiheng, Jia, Guixia, Du, Yunpeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800655/
https://www.ncbi.nlm.nih.gov/pubmed/33474193
http://dx.doi.org/10.1080/23802359.2018.1450667
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author Zhou, Yanping
Bi, Yu
Yan, Qiheng
Jia, Guixia
Du, Yunpeng
author_facet Zhou, Yanping
Bi, Yu
Yan, Qiheng
Jia, Guixia
Du, Yunpeng
author_sort Zhou, Yanping
collection PubMed
description Lilium martagon var. pilosiusculum is an endangered species with high ornamental value in Xinjiang province (China). In this study, we reported a complete chloroplast genome of L. martagon var. pilosiusculum, which was de novo assembled using the next-generation sequencing data. The complete chloroplast genome is 152,816 in length, including a large single copy region of 82,265 bp and a small single copy region of 17,541 bp and two inverted repeat regions of 26,505 bp. A total of 110 functional genes were encoded, consisting of 76 protein-coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. The overall AT content of the chloroplast genome is 63.00%. In addition, 68 SSRs and 31 large repeat sequences were found. In the maximum likelihood tree, a strong phylogenetic signal showed that L. martagon var. pilosiusculum is a species of lilium.
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spelling pubmed-78006552021-01-19 Characterization of the chloroplast genome of a rare species in China, Lilium martagon var. pilosiusculum Zhou, Yanping Bi, Yu Yan, Qiheng Jia, Guixia Du, Yunpeng Mitochondrial DNA B Resour Mitogenome Announcement Lilium martagon var. pilosiusculum is an endangered species with high ornamental value in Xinjiang province (China). In this study, we reported a complete chloroplast genome of L. martagon var. pilosiusculum, which was de novo assembled using the next-generation sequencing data. The complete chloroplast genome is 152,816 in length, including a large single copy region of 82,265 bp and a small single copy region of 17,541 bp and two inverted repeat regions of 26,505 bp. A total of 110 functional genes were encoded, consisting of 76 protein-coding genes, 30 transfer RNA genes, and four ribosomal RNA genes. The overall AT content of the chloroplast genome is 63.00%. In addition, 68 SSRs and 31 large repeat sequences were found. In the maximum likelihood tree, a strong phylogenetic signal showed that L. martagon var. pilosiusculum is a species of lilium. Taylor & Francis 2018-04-01 /pmc/articles/PMC7800655/ /pubmed/33474193 http://dx.doi.org/10.1080/23802359.2018.1450667 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhou, Yanping
Bi, Yu
Yan, Qiheng
Jia, Guixia
Du, Yunpeng
Characterization of the chloroplast genome of a rare species in China, Lilium martagon var. pilosiusculum
title Characterization of the chloroplast genome of a rare species in China, Lilium martagon var. pilosiusculum
title_full Characterization of the chloroplast genome of a rare species in China, Lilium martagon var. pilosiusculum
title_fullStr Characterization of the chloroplast genome of a rare species in China, Lilium martagon var. pilosiusculum
title_full_unstemmed Characterization of the chloroplast genome of a rare species in China, Lilium martagon var. pilosiusculum
title_short Characterization of the chloroplast genome of a rare species in China, Lilium martagon var. pilosiusculum
title_sort characterization of the chloroplast genome of a rare species in china, lilium martagon var. pilosiusculum
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800655/
https://www.ncbi.nlm.nih.gov/pubmed/33474193
http://dx.doi.org/10.1080/23802359.2018.1450667
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