Cargando…
The first complete chloroplast genome of Coptis chinensis var. brevisepala, with implication for the phylogeny of Ranunculaceae
Coptis is one of the most important medicinal plant genera in eastern Asia. To better understand the evolution of this genus, the complete chloroplast genome of C. chinensis var. brevisepala was obtained by next-generation sequencing. The plastome of C. chinensis var. brevisepala is 155,426 bp in le...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800659/ https://www.ncbi.nlm.nih.gov/pubmed/33474376 http://dx.doi.org/10.1080/23802359.2018.1501308 |
_version_ | 1783635405889863680 |
---|---|
author | Mamut, Reyim Yisilam, Gulbar Zhang, Hongwei Hina, Faiza Yang, Zhaoping |
author_facet | Mamut, Reyim Yisilam, Gulbar Zhang, Hongwei Hina, Faiza Yang, Zhaoping |
author_sort | Mamut, Reyim |
collection | PubMed |
description | Coptis is one of the most important medicinal plant genera in eastern Asia. To better understand the evolution of this genus, the complete chloroplast genome of C. chinensis var. brevisepala was obtained by next-generation sequencing. The plastome of C. chinensis var. brevisepala is 155,426 bp in length, and consists of large (LSC, 84,488 bp) and small (SSC, 17,402bp) single-copy regions, separated by pair of inverted repeat regions (IRs, 26,768 bp). It harbours 111 unique genes, including 78 protein-coding genes, 29 transfer RNA genes, and four ribosomal RNA genes. Rps19 and ycf1 were pseudogenized due to incomplete duplication in IR regions. The nucleotide composition is asymmetric (30.5% A, 19.4% C, 18.7% G, and 31.3% T) with an overall G + C content of 38.2%. The phylogeny of Ranunculaceae based on 75 CDSs of 27 taxa showed that Ranunculoideae is paraphyletic and thus needs redefinition. |
format | Online Article Text |
id | pubmed-7800659 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78006592021-01-19 The first complete chloroplast genome of Coptis chinensis var. brevisepala, with implication for the phylogeny of Ranunculaceae Mamut, Reyim Yisilam, Gulbar Zhang, Hongwei Hina, Faiza Yang, Zhaoping Mitochondrial DNA B Resour Mitogenome Announcement Coptis is one of the most important medicinal plant genera in eastern Asia. To better understand the evolution of this genus, the complete chloroplast genome of C. chinensis var. brevisepala was obtained by next-generation sequencing. The plastome of C. chinensis var. brevisepala is 155,426 bp in length, and consists of large (LSC, 84,488 bp) and small (SSC, 17,402bp) single-copy regions, separated by pair of inverted repeat regions (IRs, 26,768 bp). It harbours 111 unique genes, including 78 protein-coding genes, 29 transfer RNA genes, and four ribosomal RNA genes. Rps19 and ycf1 were pseudogenized due to incomplete duplication in IR regions. The nucleotide composition is asymmetric (30.5% A, 19.4% C, 18.7% G, and 31.3% T) with an overall G + C content of 38.2%. The phylogeny of Ranunculaceae based on 75 CDSs of 27 taxa showed that Ranunculoideae is paraphyletic and thus needs redefinition. Taylor & Francis 2018-08-17 /pmc/articles/PMC7800659/ /pubmed/33474376 http://dx.doi.org/10.1080/23802359.2018.1501308 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Mamut, Reyim Yisilam, Gulbar Zhang, Hongwei Hina, Faiza Yang, Zhaoping The first complete chloroplast genome of Coptis chinensis var. brevisepala, with implication for the phylogeny of Ranunculaceae |
title | The first complete chloroplast genome of Coptis chinensis var. brevisepala, with implication for the phylogeny of Ranunculaceae |
title_full | The first complete chloroplast genome of Coptis chinensis var. brevisepala, with implication for the phylogeny of Ranunculaceae |
title_fullStr | The first complete chloroplast genome of Coptis chinensis var. brevisepala, with implication for the phylogeny of Ranunculaceae |
title_full_unstemmed | The first complete chloroplast genome of Coptis chinensis var. brevisepala, with implication for the phylogeny of Ranunculaceae |
title_short | The first complete chloroplast genome of Coptis chinensis var. brevisepala, with implication for the phylogeny of Ranunculaceae |
title_sort | first complete chloroplast genome of coptis chinensis var. brevisepala, with implication for the phylogeny of ranunculaceae |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800659/ https://www.ncbi.nlm.nih.gov/pubmed/33474376 http://dx.doi.org/10.1080/23802359.2018.1501308 |
work_keys_str_mv | AT mamutreyim thefirstcompletechloroplastgenomeofcoptischinensisvarbrevisepalawithimplicationforthephylogenyofranunculaceae AT yisilamgulbar thefirstcompletechloroplastgenomeofcoptischinensisvarbrevisepalawithimplicationforthephylogenyofranunculaceae AT zhanghongwei thefirstcompletechloroplastgenomeofcoptischinensisvarbrevisepalawithimplicationforthephylogenyofranunculaceae AT hinafaiza thefirstcompletechloroplastgenomeofcoptischinensisvarbrevisepalawithimplicationforthephylogenyofranunculaceae AT yangzhaoping thefirstcompletechloroplastgenomeofcoptischinensisvarbrevisepalawithimplicationforthephylogenyofranunculaceae AT mamutreyim firstcompletechloroplastgenomeofcoptischinensisvarbrevisepalawithimplicationforthephylogenyofranunculaceae AT yisilamgulbar firstcompletechloroplastgenomeofcoptischinensisvarbrevisepalawithimplicationforthephylogenyofranunculaceae AT zhanghongwei firstcompletechloroplastgenomeofcoptischinensisvarbrevisepalawithimplicationforthephylogenyofranunculaceae AT hinafaiza firstcompletechloroplastgenomeofcoptischinensisvarbrevisepalawithimplicationforthephylogenyofranunculaceae AT yangzhaoping firstcompletechloroplastgenomeofcoptischinensisvarbrevisepalawithimplicationforthephylogenyofranunculaceae |