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Complete mitochondrion genome of the endangered Mohave tui chub Siphateles bicolor mohavensis (Cypriniformes: Cyprinidae)

The Mohave tui chub (Siphateles bicolor mohavensis) is an endangered cyprinid fish endemic to the Mojave Desert region of southeastern California, USA. Here, we describe the complete 16,607 base pair (bp) mitochondrial genome of S. b. mohavensis. The mitogenome has a nucleotide base composition of A...

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Autores principales: Glaser, Frances L., Owen, Kylie S., Henkanaththegedara, Sujan M., Parmenter, Steve, Stockwell, Craig A., Lema, Sean C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800675/
https://www.ncbi.nlm.nih.gov/pubmed/33473985
http://dx.doi.org/10.1080/23802359.2017.1398602
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author Glaser, Frances L.
Owen, Kylie S.
Henkanaththegedara, Sujan M.
Parmenter, Steve
Stockwell, Craig A.
Lema, Sean C.
author_facet Glaser, Frances L.
Owen, Kylie S.
Henkanaththegedara, Sujan M.
Parmenter, Steve
Stockwell, Craig A.
Lema, Sean C.
author_sort Glaser, Frances L.
collection PubMed
description The Mohave tui chub (Siphateles bicolor mohavensis) is an endangered cyprinid fish endemic to the Mojave Desert region of southeastern California, USA. Here, we describe the complete 16,607 base pair (bp) mitochondrial genome of S. b. mohavensis. The mitogenome has a nucleotide base composition of A (29.08%), T (26.91%), G (17.58%), and C (26.43%), and encodes 13 protein subunits, 22 tRNAs, a 12S rRNA of 956 bp and 16S rRNA of 1691 bp, and a 929 bp D-loop control region, each located in the conserved mtDNA structure typical for cyprinid fishes. All protein-coding genes have initiation codons of ATG or GTG, and only the ND1, CO1, ATPase8, NDL4, ND4, ND5, and ND6 genes have complete stop codons. Phylogenetic analyses confirmed the relationship of S. b. mohavensis to several genera of cyprinids (e.g. Gila, Acrocheilus) also endemic to western North America. This characterized mitogenome may help inform management practices for S. b. mohavensis by facilitating future studies on how allopatric populations of this imperiled species are evolving across refuge habitats.
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spelling pubmed-78006752021-01-19 Complete mitochondrion genome of the endangered Mohave tui chub Siphateles bicolor mohavensis (Cypriniformes: Cyprinidae) Glaser, Frances L. Owen, Kylie S. Henkanaththegedara, Sujan M. Parmenter, Steve Stockwell, Craig A. Lema, Sean C. Mitochondrial DNA B Resour Mitogenome Announcement The Mohave tui chub (Siphateles bicolor mohavensis) is an endangered cyprinid fish endemic to the Mojave Desert region of southeastern California, USA. Here, we describe the complete 16,607 base pair (bp) mitochondrial genome of S. b. mohavensis. The mitogenome has a nucleotide base composition of A (29.08%), T (26.91%), G (17.58%), and C (26.43%), and encodes 13 protein subunits, 22 tRNAs, a 12S rRNA of 956 bp and 16S rRNA of 1691 bp, and a 929 bp D-loop control region, each located in the conserved mtDNA structure typical for cyprinid fishes. All protein-coding genes have initiation codons of ATG or GTG, and only the ND1, CO1, ATPase8, NDL4, ND4, ND5, and ND6 genes have complete stop codons. Phylogenetic analyses confirmed the relationship of S. b. mohavensis to several genera of cyprinids (e.g. Gila, Acrocheilus) also endemic to western North America. This characterized mitogenome may help inform management practices for S. b. mohavensis by facilitating future studies on how allopatric populations of this imperiled species are evolving across refuge habitats. Taylor & Francis 2017-11-08 /pmc/articles/PMC7800675/ /pubmed/33473985 http://dx.doi.org/10.1080/23802359.2017.1398602 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Glaser, Frances L.
Owen, Kylie S.
Henkanaththegedara, Sujan M.
Parmenter, Steve
Stockwell, Craig A.
Lema, Sean C.
Complete mitochondrion genome of the endangered Mohave tui chub Siphateles bicolor mohavensis (Cypriniformes: Cyprinidae)
title Complete mitochondrion genome of the endangered Mohave tui chub Siphateles bicolor mohavensis (Cypriniformes: Cyprinidae)
title_full Complete mitochondrion genome of the endangered Mohave tui chub Siphateles bicolor mohavensis (Cypriniformes: Cyprinidae)
title_fullStr Complete mitochondrion genome of the endangered Mohave tui chub Siphateles bicolor mohavensis (Cypriniformes: Cyprinidae)
title_full_unstemmed Complete mitochondrion genome of the endangered Mohave tui chub Siphateles bicolor mohavensis (Cypriniformes: Cyprinidae)
title_short Complete mitochondrion genome of the endangered Mohave tui chub Siphateles bicolor mohavensis (Cypriniformes: Cyprinidae)
title_sort complete mitochondrion genome of the endangered mohave tui chub siphateles bicolor mohavensis (cypriniformes: cyprinidae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800675/
https://www.ncbi.nlm.nih.gov/pubmed/33473985
http://dx.doi.org/10.1080/23802359.2017.1398602
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