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DNA barcoding as a tool for robust identification of cervids of India and its utility in wildlife forensics

DNA barcoding has become a popular method of choice for identification of specimen based on molecular techniques. Here, we present preliminary findings on generating robust DNA barcode library of Cervids of India. The dataset comprising the DNA barcode library of seven deer species included in the g...

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Autores principales: Kumar, Ved P., Shukla, Malay, Rajpoot, Ankita, Thakur, Mukesh, Nigam, Parag, Kumar, Dhyanendra, Mehta, Anil Kumar, Goyal, Surendra P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800678/
https://www.ncbi.nlm.nih.gov/pubmed/33474133
http://dx.doi.org/10.1080/23802359.2018.1438858
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author Kumar, Ved P.
Shukla, Malay
Rajpoot, Ankita
Thakur, Mukesh
Nigam, Parag
Kumar, Dhyanendra
Mehta, Anil Kumar
Goyal, Surendra P.
author_facet Kumar, Ved P.
Shukla, Malay
Rajpoot, Ankita
Thakur, Mukesh
Nigam, Parag
Kumar, Dhyanendra
Mehta, Anil Kumar
Goyal, Surendra P.
author_sort Kumar, Ved P.
collection PubMed
description DNA barcoding has become a popular method of choice for identification of specimen based on molecular techniques. Here, we present preliminary findings on generating robust DNA barcode library of Cervids of India. The dataset comprising the DNA barcode library of seven deer species included in the genus Cervus, Axis and Muntiacus classified under family Cervidae. Mitochondrial Cytochrome C Oxidase subunit I gene of ca. 710 bp accepted widely as DNA barcode region, was used for generating species specific signature from 31 known samples of seven Indian deer species. Expectedly, the NJ tree clustered three genera i.e. Cervus, Axis and Muntiacus of Cervids of India into three clades. Further, the intra- and interspecies distances based on Kimura 2 parameter model also supported the results. The average intra- and interspecies sequence divergence were 0.011 (±0.09) and 0.65 (±0.14), respectively. The present study has exhibited that DNA barcoding has discriminating power to delineate boundaries among the closely related species. The data generated are of high importance to the law enforcement agencies in effective identification of species in wildlife offence cases. The similar approach can be utilized for generating DNA barcodes for other Indian mammals for making effective management and conservation action decisions.
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spelling pubmed-78006782021-01-19 DNA barcoding as a tool for robust identification of cervids of India and its utility in wildlife forensics Kumar, Ved P. Shukla, Malay Rajpoot, Ankita Thakur, Mukesh Nigam, Parag Kumar, Dhyanendra Mehta, Anil Kumar Goyal, Surendra P. Mitochondrial DNA B Resour Mito Communication DNA barcoding has become a popular method of choice for identification of specimen based on molecular techniques. Here, we present preliminary findings on generating robust DNA barcode library of Cervids of India. The dataset comprising the DNA barcode library of seven deer species included in the genus Cervus, Axis and Muntiacus classified under family Cervidae. Mitochondrial Cytochrome C Oxidase subunit I gene of ca. 710 bp accepted widely as DNA barcode region, was used for generating species specific signature from 31 known samples of seven Indian deer species. Expectedly, the NJ tree clustered three genera i.e. Cervus, Axis and Muntiacus of Cervids of India into three clades. Further, the intra- and interspecies distances based on Kimura 2 parameter model also supported the results. The average intra- and interspecies sequence divergence were 0.011 (±0.09) and 0.65 (±0.14), respectively. The present study has exhibited that DNA barcoding has discriminating power to delineate boundaries among the closely related species. The data generated are of high importance to the law enforcement agencies in effective identification of species in wildlife offence cases. The similar approach can be utilized for generating DNA barcodes for other Indian mammals for making effective management and conservation action decisions. Taylor & Francis 2018-02-20 /pmc/articles/PMC7800678/ /pubmed/33474133 http://dx.doi.org/10.1080/23802359.2018.1438858 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mito Communication
Kumar, Ved P.
Shukla, Malay
Rajpoot, Ankita
Thakur, Mukesh
Nigam, Parag
Kumar, Dhyanendra
Mehta, Anil Kumar
Goyal, Surendra P.
DNA barcoding as a tool for robust identification of cervids of India and its utility in wildlife forensics
title DNA barcoding as a tool for robust identification of cervids of India and its utility in wildlife forensics
title_full DNA barcoding as a tool for robust identification of cervids of India and its utility in wildlife forensics
title_fullStr DNA barcoding as a tool for robust identification of cervids of India and its utility in wildlife forensics
title_full_unstemmed DNA barcoding as a tool for robust identification of cervids of India and its utility in wildlife forensics
title_short DNA barcoding as a tool for robust identification of cervids of India and its utility in wildlife forensics
title_sort dna barcoding as a tool for robust identification of cervids of india and its utility in wildlife forensics
topic Mito Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800678/
https://www.ncbi.nlm.nih.gov/pubmed/33474133
http://dx.doi.org/10.1080/23802359.2018.1438858
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