Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae)

The complete chloroplast genome sequence of Allium obliquum was determined by Illumina single-end sequencing. The complete plastid genome was 152,387 bp in length, containing a large single copy (LSC) of 81,588 bp and a small single copy (SSC) of 18,059 bp, which were separated by a pair of 26,370 b...

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Autores principales: Filyushin, Mikhail A., Beletsky, Alexey V., Mazur, Alexander M., Kochieva, Elena Z.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800693/
https://www.ncbi.nlm.nih.gov/pubmed/33474180
http://dx.doi.org/10.1080/23802359.2018.1456369
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author Filyushin, Mikhail A.
Beletsky, Alexey V.
Mazur, Alexander M.
Kochieva, Elena Z.
author_facet Filyushin, Mikhail A.
Beletsky, Alexey V.
Mazur, Alexander M.
Kochieva, Elena Z.
author_sort Filyushin, Mikhail A.
collection PubMed
description The complete chloroplast genome sequence of Allium obliquum was determined by Illumina single-end sequencing. The complete plastid genome was 152,387 bp in length, containing a large single copy (LSC) of 81,588 bp and a small single copy (SSC) of 18,059 bp, which were separated by a pair of 26,370 bp inverted repeats (IRs). A total of 134 genes were annotated, including 83 protein coding genes, 38 tRNA genes, eight rRNA genes, and five pseudogenes. The overall GC contents of the plastid genome were 36.8%. Unlike A. cepa (onion) and A. sativum (garlic), A. obliquum encodes a functional intact infA gene.
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spelling pubmed-78006932021-01-19 Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae) Filyushin, Mikhail A. Beletsky, Alexey V. Mazur, Alexander M. Kochieva, Elena Z. Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast genome sequence of Allium obliquum was determined by Illumina single-end sequencing. The complete plastid genome was 152,387 bp in length, containing a large single copy (LSC) of 81,588 bp and a small single copy (SSC) of 18,059 bp, which were separated by a pair of 26,370 bp inverted repeats (IRs). A total of 134 genes were annotated, including 83 protein coding genes, 38 tRNA genes, eight rRNA genes, and five pseudogenes. The overall GC contents of the plastid genome were 36.8%. Unlike A. cepa (onion) and A. sativum (garlic), A. obliquum encodes a functional intact infA gene. Taylor & Francis 2018-03-26 /pmc/articles/PMC7800693/ /pubmed/33474180 http://dx.doi.org/10.1080/23802359.2018.1456369 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Filyushin, Mikhail A.
Beletsky, Alexey V.
Mazur, Alexander M.
Kochieva, Elena Z.
Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae)
title Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae)
title_full Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae)
title_fullStr Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae)
title_full_unstemmed Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae)
title_short Characterization of the complete plastid genome of lop-sided onion Allium obliquum L. (Amaryllidaceae)
title_sort characterization of the complete plastid genome of lop-sided onion allium obliquum l. (amaryllidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800693/
https://www.ncbi.nlm.nih.gov/pubmed/33474180
http://dx.doi.org/10.1080/23802359.2018.1456369
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