Cargando…
The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae)
Fragaria orientalis (Rosales: Rosaceae) as drought-resisting plant is distributed throughout northeast and central Asia. The complete chloroplast genome sequence of Fragaria orientalis is reported and characterized in this study. The genome size of F. orientalis is 147,835 bp, containing a pair of i...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800701/ https://www.ncbi.nlm.nih.gov/pubmed/33474091 http://dx.doi.org/10.1080/23802359.2018.1424578 |
_version_ | 1783635415866015744 |
---|---|
author | Han, Yan Wu, Hai Bo Liu, Yuan |
author_facet | Han, Yan Wu, Hai Bo Liu, Yuan |
author_sort | Han, Yan |
collection | PubMed |
description | Fragaria orientalis (Rosales: Rosaceae) as drought-resisting plant is distributed throughout northeast and central Asia. The complete chloroplast genome sequence of Fragaria orientalis is reported and characterized in this study. The genome size of F. orientalis is 147,835 bp, containing a pair of inverted repeats (IR) regions of 51,216 bp, which were separated by a large single copy (LSC) region of 83,232 bp and a small single copy (SSC) region of 13,387 bp. The genome contains 128 genes, including 84 protein-coding genes, 36 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. A total of 17 of these genes are duplicated in the IR regions, 16 genes contain one intron, and ycf3 has two introns. Maximum likelihood phylogenetic analysis based on chloroplast genome sequences indicates that F. orientalis is closely related to Fragaria chiloensis and Fragaria virginiana from the family Rosaceae. |
format | Online Article Text |
id | pubmed-7800701 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78007012021-01-19 The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae) Han, Yan Wu, Hai Bo Liu, Yuan Mitochondrial DNA B Resour Mitogenome Announcement Fragaria orientalis (Rosales: Rosaceae) as drought-resisting plant is distributed throughout northeast and central Asia. The complete chloroplast genome sequence of Fragaria orientalis is reported and characterized in this study. The genome size of F. orientalis is 147,835 bp, containing a pair of inverted repeats (IR) regions of 51,216 bp, which were separated by a large single copy (LSC) region of 83,232 bp and a small single copy (SSC) region of 13,387 bp. The genome contains 128 genes, including 84 protein-coding genes, 36 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. A total of 17 of these genes are duplicated in the IR regions, 16 genes contain one intron, and ycf3 has two introns. Maximum likelihood phylogenetic analysis based on chloroplast genome sequences indicates that F. orientalis is closely related to Fragaria chiloensis and Fragaria virginiana from the family Rosaceae. Taylor & Francis 2018-01-12 /pmc/articles/PMC7800701/ /pubmed/33474091 http://dx.doi.org/10.1080/23802359.2018.1424578 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Han, Yan Wu, Hai Bo Liu, Yuan The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae) |
title | The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae) |
title_full | The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae) |
title_fullStr | The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae) |
title_short | The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae) |
title_sort | complete chloroplast genome sequence of fragaria orientalis (rosales: rosaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800701/ https://www.ncbi.nlm.nih.gov/pubmed/33474091 http://dx.doi.org/10.1080/23802359.2018.1424578 |
work_keys_str_mv | AT hanyan thecompletechloroplastgenomesequenceoffragariaorientalisrosalesrosaceae AT wuhaibo thecompletechloroplastgenomesequenceoffragariaorientalisrosalesrosaceae AT liuyuan thecompletechloroplastgenomesequenceoffragariaorientalisrosalesrosaceae AT hanyan completechloroplastgenomesequenceoffragariaorientalisrosalesrosaceae AT wuhaibo completechloroplastgenomesequenceoffragariaorientalisrosalesrosaceae AT liuyuan completechloroplastgenomesequenceoffragariaorientalisrosalesrosaceae |