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The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae)

Fragaria orientalis (Rosales: Rosaceae) as drought-resisting plant is distributed throughout northeast and central Asia. The complete chloroplast genome sequence of Fragaria orientalis is reported and characterized in this study. The genome size of F. orientalis is 147,835 bp, containing a pair of i...

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Autores principales: Han, Yan, Wu, Hai Bo, Liu, Yuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800701/
https://www.ncbi.nlm.nih.gov/pubmed/33474091
http://dx.doi.org/10.1080/23802359.2018.1424578
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author Han, Yan
Wu, Hai Bo
Liu, Yuan
author_facet Han, Yan
Wu, Hai Bo
Liu, Yuan
author_sort Han, Yan
collection PubMed
description Fragaria orientalis (Rosales: Rosaceae) as drought-resisting plant is distributed throughout northeast and central Asia. The complete chloroplast genome sequence of Fragaria orientalis is reported and characterized in this study. The genome size of F. orientalis is 147,835 bp, containing a pair of inverted repeats (IR) regions of 51,216 bp, which were separated by a large single copy (LSC) region of 83,232 bp and a small single copy (SSC) region of 13,387 bp. The genome contains 128 genes, including 84 protein-coding genes, 36 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. A total of 17 of these genes are duplicated in the IR regions, 16 genes contain one intron, and ycf3 has two introns. Maximum likelihood phylogenetic analysis based on chloroplast genome sequences indicates that F. orientalis is closely related to Fragaria chiloensis and Fragaria virginiana from the family Rosaceae.
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spelling pubmed-78007012021-01-19 The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae) Han, Yan Wu, Hai Bo Liu, Yuan Mitochondrial DNA B Resour Mitogenome Announcement Fragaria orientalis (Rosales: Rosaceae) as drought-resisting plant is distributed throughout northeast and central Asia. The complete chloroplast genome sequence of Fragaria orientalis is reported and characterized in this study. The genome size of F. orientalis is 147,835 bp, containing a pair of inverted repeats (IR) regions of 51,216 bp, which were separated by a large single copy (LSC) region of 83,232 bp and a small single copy (SSC) region of 13,387 bp. The genome contains 128 genes, including 84 protein-coding genes, 36 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. A total of 17 of these genes are duplicated in the IR regions, 16 genes contain one intron, and ycf3 has two introns. Maximum likelihood phylogenetic analysis based on chloroplast genome sequences indicates that F. orientalis is closely related to Fragaria chiloensis and Fragaria virginiana from the family Rosaceae. Taylor & Francis 2018-01-12 /pmc/articles/PMC7800701/ /pubmed/33474091 http://dx.doi.org/10.1080/23802359.2018.1424578 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Han, Yan
Wu, Hai Bo
Liu, Yuan
The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae)
title The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae)
title_full The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae)
title_fullStr The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae)
title_full_unstemmed The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae)
title_short The complete chloroplast genome sequence of Fragaria orientalis (Rosales: Rosaceae)
title_sort complete chloroplast genome sequence of fragaria orientalis (rosales: rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800701/
https://www.ncbi.nlm.nih.gov/pubmed/33474091
http://dx.doi.org/10.1080/23802359.2018.1424578
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