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The complete mitochondrial genome of Thryssa hamiltonii (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei
The complete mitochondrial genome of Thryssa hamiltonii has been determined. The whole sequence was 16,894 bp in length and included 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and one control region (D-loop). The overall base composition is A 30.77%, C 27.97%, G 16.25%,...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800704/ https://www.ncbi.nlm.nih.gov/pubmed/33474086 http://dx.doi.org/10.1080/23802359.2018.1424584 |
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author | Jiang, Hui Lü, Zhenming Liu, Liqing Liu, Bingjian Gong, Li |
author_facet | Jiang, Hui Lü, Zhenming Liu, Liqing Liu, Bingjian Gong, Li |
author_sort | Jiang, Hui |
collection | PubMed |
description | The complete mitochondrial genome of Thryssa hamiltonii has been determined. The whole sequence was 16,894 bp in length and included 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and one control region (D-loop). The overall base composition is A 30.77%, C 27.97%, G 16.25%, T 25.01%, with a slightly A + T bias of 55.78%. With the exception of ND6 and eight tRNA genes, all other mitochondrial genes are encoded on the heavy strand. Three tandem repeat sequences were observed in the control region. Phylogenetic tree was constructed based on 13 protein-coding genes sequences of 21 clupeoidei species, and the result showed that T. hamiltonii is most closely related to T. dussumieri. These mitogenome sequence data will be useful for population genetics and phylogenetic analysis of the Clupeoidei. |
format | Online Article Text |
id | pubmed-7800704 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78007042021-01-19 The complete mitochondrial genome of Thryssa hamiltonii (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei Jiang, Hui Lü, Zhenming Liu, Liqing Liu, Bingjian Gong, Li Mitochondrial DNA B Resour Mitogenome Announcement The complete mitochondrial genome of Thryssa hamiltonii has been determined. The whole sequence was 16,894 bp in length and included 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes and one control region (D-loop). The overall base composition is A 30.77%, C 27.97%, G 16.25%, T 25.01%, with a slightly A + T bias of 55.78%. With the exception of ND6 and eight tRNA genes, all other mitochondrial genes are encoded on the heavy strand. Three tandem repeat sequences were observed in the control region. Phylogenetic tree was constructed based on 13 protein-coding genes sequences of 21 clupeoidei species, and the result showed that T. hamiltonii is most closely related to T. dussumieri. These mitogenome sequence data will be useful for population genetics and phylogenetic analysis of the Clupeoidei. Taylor & Francis 2018-01-10 /pmc/articles/PMC7800704/ /pubmed/33474086 http://dx.doi.org/10.1080/23802359.2018.1424584 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Jiang, Hui Lü, Zhenming Liu, Liqing Liu, Bingjian Gong, Li The complete mitochondrial genome of Thryssa hamiltonii (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei |
title | The complete mitochondrial genome of Thryssa hamiltonii (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei |
title_full | The complete mitochondrial genome of Thryssa hamiltonii (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei |
title_fullStr | The complete mitochondrial genome of Thryssa hamiltonii (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei |
title_full_unstemmed | The complete mitochondrial genome of Thryssa hamiltonii (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei |
title_short | The complete mitochondrial genome of Thryssa hamiltonii (Engraulinae, Engranlidae, Clupeoidei) and phylogenetic studies of Clupeoidei |
title_sort | complete mitochondrial genome of thryssa hamiltonii (engraulinae, engranlidae, clupeoidei) and phylogenetic studies of clupeoidei |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800704/ https://www.ncbi.nlm.nih.gov/pubmed/33474086 http://dx.doi.org/10.1080/23802359.2018.1424584 |
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