Cargando…

The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae)

Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete cp genome of the Euonymus fortunei has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 157,639 bp in size, and comprises a pair...

Descripción completa

Detalles Bibliográficos
Autores principales: Hua, Wenping, Chen, Chen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800781/
https://www.ncbi.nlm.nih.gov/pubmed/33474268
http://dx.doi.org/10.1080/23802359.2018.1473724
_version_ 1783635428240261120
author Hua, Wenping
Chen, Chen
author_facet Hua, Wenping
Chen, Chen
author_sort Hua, Wenping
collection PubMed
description Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete cp genome of the Euonymus fortunei has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 157,639 bp in size, and comprises a pair of inverted repeat (IR) regions of 26,668 bp each, a large single copy (LSC) region of 85,956 bp and a small single copy (SSC) region of 18,347 bp. The total GC content is 37.2%, while the corresponding values of the LSC, SSC, and IR region are 35.1%, 31.7%, and 42.7%, respectively. The cp genome contains 126 genes, including 89 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes and one pseudogene. The maximum-likelihood phylogenetic analysis showed a strong sister relationship with Euonymus japonicus in Celastraceae. Our findings provide a foundation for further investigation of cp genome evolution in E. fortunei and other higher plants.
format Online
Article
Text
id pubmed-7800781
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78007812021-01-19 The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) Hua, Wenping Chen, Chen Mitochondrial DNA B Resour Mitogenome Announcement Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete cp genome of the Euonymus fortunei has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 157,639 bp in size, and comprises a pair of inverted repeat (IR) regions of 26,668 bp each, a large single copy (LSC) region of 85,956 bp and a small single copy (SSC) region of 18,347 bp. The total GC content is 37.2%, while the corresponding values of the LSC, SSC, and IR region are 35.1%, 31.7%, and 42.7%, respectively. The cp genome contains 126 genes, including 89 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes and one pseudogene. The maximum-likelihood phylogenetic analysis showed a strong sister relationship with Euonymus japonicus in Celastraceae. Our findings provide a foundation for further investigation of cp genome evolution in E. fortunei and other higher plants. Taylor & Francis 2018-05-23 /pmc/articles/PMC7800781/ /pubmed/33474268 http://dx.doi.org/10.1080/23802359.2018.1473724 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Hua, Wenping
Chen, Chen
The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae)
title The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae)
title_full The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae)
title_fullStr The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae)
title_full_unstemmed The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae)
title_short The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae)
title_sort complete chloroplast genome sequence of the plant euonymus fortunei (celastraceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800781/
https://www.ncbi.nlm.nih.gov/pubmed/33474268
http://dx.doi.org/10.1080/23802359.2018.1473724
work_keys_str_mv AT huawenping thecompletechloroplastgenomesequenceoftheplanteuonymusfortuneicelastraceae
AT chenchen thecompletechloroplastgenomesequenceoftheplanteuonymusfortuneicelastraceae
AT huawenping completechloroplastgenomesequenceoftheplanteuonymusfortuneicelastraceae
AT chenchen completechloroplastgenomesequenceoftheplanteuonymusfortuneicelastraceae