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The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae)
Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete cp genome of the Euonymus fortunei has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 157,639 bp in size, and comprises a pair...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800781/ https://www.ncbi.nlm.nih.gov/pubmed/33474268 http://dx.doi.org/10.1080/23802359.2018.1473724 |
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author | Hua, Wenping Chen, Chen |
author_facet | Hua, Wenping Chen, Chen |
author_sort | Hua, Wenping |
collection | PubMed |
description | Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete cp genome of the Euonymus fortunei has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 157,639 bp in size, and comprises a pair of inverted repeat (IR) regions of 26,668 bp each, a large single copy (LSC) region of 85,956 bp and a small single copy (SSC) region of 18,347 bp. The total GC content is 37.2%, while the corresponding values of the LSC, SSC, and IR region are 35.1%, 31.7%, and 42.7%, respectively. The cp genome contains 126 genes, including 89 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes and one pseudogene. The maximum-likelihood phylogenetic analysis showed a strong sister relationship with Euonymus japonicus in Celastraceae. Our findings provide a foundation for further investigation of cp genome evolution in E. fortunei and other higher plants. |
format | Online Article Text |
id | pubmed-7800781 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78007812021-01-19 The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) Hua, Wenping Chen, Chen Mitochondrial DNA B Resour Mitogenome Announcement Chloroplast (cp) genome sequences become a useful popular tool for population and phylogeny in recent reports. Here, the complete cp genome of the Euonymus fortunei has been reconstructed from the whole-genome Illumina sequencing data. The circular genome is 157,639 bp in size, and comprises a pair of inverted repeat (IR) regions of 26,668 bp each, a large single copy (LSC) region of 85,956 bp and a small single copy (SSC) region of 18,347 bp. The total GC content is 37.2%, while the corresponding values of the LSC, SSC, and IR region are 35.1%, 31.7%, and 42.7%, respectively. The cp genome contains 126 genes, including 89 protein-coding genes, eight ribosomal RNA genes, and 29 transfer RNA genes and one pseudogene. The maximum-likelihood phylogenetic analysis showed a strong sister relationship with Euonymus japonicus in Celastraceae. Our findings provide a foundation for further investigation of cp genome evolution in E. fortunei and other higher plants. Taylor & Francis 2018-05-23 /pmc/articles/PMC7800781/ /pubmed/33474268 http://dx.doi.org/10.1080/23802359.2018.1473724 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Hua, Wenping Chen, Chen The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
title | The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
title_full | The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
title_fullStr | The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
title_full_unstemmed | The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
title_short | The complete chloroplast genome sequence of the plant Euonymus fortunei (Celastraceae) |
title_sort | complete chloroplast genome sequence of the plant euonymus fortunei (celastraceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800781/ https://www.ncbi.nlm.nih.gov/pubmed/33474268 http://dx.doi.org/10.1080/23802359.2018.1473724 |
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