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The complete chloroplast genome of Tomentosa cherry Prunus tomentosa (Prunoideae, Rosaceae)

Prunus tomentosa belongs to subgenus Lithocerasus in family Rosaceae. It is native to northern China and has become a staple back yard garden plant in Russia and much of Eastern Europe. In this study, de novo assembly with low coverage whole genome sequencing facilitated to generate the complete chl...

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Autores principales: Chen, Tao, Wang, Yan, Wang, Lei, Chen, Qing, Zhang, Jing, Tang, Hao-Ru, Wang, Xiao-Rong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800790/
https://www.ncbi.nlm.nih.gov/pubmed/33474280
http://dx.doi.org/10.1080/23802359.2018.1476068
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author Chen, Tao
Wang, Yan
Wang, Lei
Chen, Qing
Zhang, Jing
Tang, Hao-Ru
Wang, Xiao-Rong
author_facet Chen, Tao
Wang, Yan
Wang, Lei
Chen, Qing
Zhang, Jing
Tang, Hao-Ru
Wang, Xiao-Rong
author_sort Chen, Tao
collection PubMed
description Prunus tomentosa belongs to subgenus Lithocerasus in family Rosaceae. It is native to northern China and has become a staple back yard garden plant in Russia and much of Eastern Europe. In this study, de novo assembly with low coverage whole genome sequencing facilitated to generate the complete chloroplast (cp) genome of P. tomentosa. The genome size is 158,356 bp in length. It exhibited a typical quadripartite structure comprising a large single copy region (LSC, 86,630 bp), a small single copy region (SSC, 19,010 bp) and a pair of inverted repeat regions (IRs, 26,358 bp each). A total of 115 genes were predicted including 82 protein-coding genes, 29 tRNA genes, and four rRNA genes. Phylogenetic analysis indicated that P. tomentosa is most closely related to P. mume suggesting the phylogenetic relationship between P. tomentosa and subgenus prunpphora.
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spelling pubmed-78007902021-01-19 The complete chloroplast genome of Tomentosa cherry Prunus tomentosa (Prunoideae, Rosaceae) Chen, Tao Wang, Yan Wang, Lei Chen, Qing Zhang, Jing Tang, Hao-Ru Wang, Xiao-Rong Mitochondrial DNA B Resour Mitogenome Announcement Prunus tomentosa belongs to subgenus Lithocerasus in family Rosaceae. It is native to northern China and has become a staple back yard garden plant in Russia and much of Eastern Europe. In this study, de novo assembly with low coverage whole genome sequencing facilitated to generate the complete chloroplast (cp) genome of P. tomentosa. The genome size is 158,356 bp in length. It exhibited a typical quadripartite structure comprising a large single copy region (LSC, 86,630 bp), a small single copy region (SSC, 19,010 bp) and a pair of inverted repeat regions (IRs, 26,358 bp each). A total of 115 genes were predicted including 82 protein-coding genes, 29 tRNA genes, and four rRNA genes. Phylogenetic analysis indicated that P. tomentosa is most closely related to P. mume suggesting the phylogenetic relationship between P. tomentosa and subgenus prunpphora. Taylor & Francis 2018-06-11 /pmc/articles/PMC7800790/ /pubmed/33474280 http://dx.doi.org/10.1080/23802359.2018.1476068 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Chen, Tao
Wang, Yan
Wang, Lei
Chen, Qing
Zhang, Jing
Tang, Hao-Ru
Wang, Xiao-Rong
The complete chloroplast genome of Tomentosa cherry Prunus tomentosa (Prunoideae, Rosaceae)
title The complete chloroplast genome of Tomentosa cherry Prunus tomentosa (Prunoideae, Rosaceae)
title_full The complete chloroplast genome of Tomentosa cherry Prunus tomentosa (Prunoideae, Rosaceae)
title_fullStr The complete chloroplast genome of Tomentosa cherry Prunus tomentosa (Prunoideae, Rosaceae)
title_full_unstemmed The complete chloroplast genome of Tomentosa cherry Prunus tomentosa (Prunoideae, Rosaceae)
title_short The complete chloroplast genome of Tomentosa cherry Prunus tomentosa (Prunoideae, Rosaceae)
title_sort complete chloroplast genome of tomentosa cherry prunus tomentosa (prunoideae, rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800790/
https://www.ncbi.nlm.nih.gov/pubmed/33474280
http://dx.doi.org/10.1080/23802359.2018.1476068
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