The complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae)

In this study, we determined the complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae) (NCBI acc. no. KX364402). The gene order and structure of the C. macrocarpa plastome are similar to those of a typical angiosperm. The complete plastome is 155,297 bp in length, and consist...

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Autores principales: Jo, Sangjin, Kim, Hoe-Won, Kim, Young-Kee, Cheon, Se-Hwan, Kim, Ki-Joong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800814/
https://www.ncbi.nlm.nih.gov/pubmed/33473704
http://dx.doi.org/10.1080/23802359.2016.1233468
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author Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Cheon, Se-Hwan
Kim, Ki-Joong
author_facet Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Cheon, Se-Hwan
Kim, Ki-Joong
author_sort Jo, Sangjin
collection PubMed
description In this study, we determined the complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae) (NCBI acc. no. KX364402). The gene order and structure of the C. macrocarpa plastome are similar to those of a typical angiosperm. The complete plastome is 155,297 bp in length, and consists of a large single-copy region of 85,586 bp and a small single-copy region of 18,131 bp, which are separated by two inverted repeats of 25,792 bp. The plastome contains 113 genes, of which 79 are protein-coding genes, 30 are tRNA genes and 4 are rRNA genes. Sixteen genes contained one intron and two genes have two introns. The average A–T content of the plastome is 62.0%. A total of 31 simple sequence repeat loci were identified within the genome. Phylogenetic analysis revealed that C. macrocarpa is a member of the paraphyletic subfamily Rauvolfioideae of Apocynaceae. The sister group relationship of C. macrocarpa to the Apocynoideae–Asclepiadoideae clade is supported by 100% bootstrap values.
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spelling pubmed-78008142021-01-19 The complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae) Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Cheon, Se-Hwan Kim, Ki-Joong Mitochondrial DNA B Resour Mitogenome Announcement In this study, we determined the complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae) (NCBI acc. no. KX364402). The gene order and structure of the C. macrocarpa plastome are similar to those of a typical angiosperm. The complete plastome is 155,297 bp in length, and consists of a large single-copy region of 85,586 bp and a small single-copy region of 18,131 bp, which are separated by two inverted repeats of 25,792 bp. The plastome contains 113 genes, of which 79 are protein-coding genes, 30 are tRNA genes and 4 are rRNA genes. Sixteen genes contained one intron and two genes have two introns. The average A–T content of the plastome is 62.0%. A total of 31 simple sequence repeat loci were identified within the genome. Phylogenetic analysis revealed that C. macrocarpa is a member of the paraphyletic subfamily Rauvolfioideae of Apocynaceae. The sister group relationship of C. macrocarpa to the Apocynoideae–Asclepiadoideae clade is supported by 100% bootstrap values. Taylor & Francis 2017-01-16 /pmc/articles/PMC7800814/ /pubmed/33473704 http://dx.doi.org/10.1080/23802359.2016.1233468 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/Licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/Licenses/by/4.0/
spellingShingle Mitogenome Announcement
Jo, Sangjin
Kim, Hoe-Won
Kim, Young-Kee
Cheon, Se-Hwan
Kim, Ki-Joong
The complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae)
title The complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae)
title_full The complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae)
title_fullStr The complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae)
title_full_unstemmed The complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae)
title_short The complete plastome sequence of Carissa macrocarpa (Eckl.) A. DC. (Apocynaceae)
title_sort complete plastome sequence of carissa macrocarpa (eckl.) a. dc. (apocynaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800814/
https://www.ncbi.nlm.nih.gov/pubmed/33473704
http://dx.doi.org/10.1080/23802359.2016.1233468
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