Cargando…

Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China

The complete mitogenome sequence of the Ussuri shrew (Sorex mirabilis) was determined using long PCR. The genome was 17,315 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhu, Liu, Xin-Min, Tian, Zhi-Min, Jin, Ming, Dong, Jun-Sheng, Zhang, Jian-Yu, Du
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800820/
https://www.ncbi.nlm.nih.gov/pubmed/33473932
http://dx.doi.org/10.1080/23802359.2017.1375873
_version_ 1783635437483458560
author Zhu, Liu
Xin-Min, Tian
Zhi-Min, Jin
Ming, Dong
Jun-Sheng, Zhang
Jian-Yu, Du
author_facet Zhu, Liu
Xin-Min, Tian
Zhi-Min, Jin
Ming, Dong
Jun-Sheng, Zhang
Jian-Yu, Du
author_sort Zhu, Liu
collection PubMed
description The complete mitogenome sequence of the Ussuri shrew (Sorex mirabilis) was determined using long PCR. The genome was 17,315 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of the heavy strand is A (32.6%), C (25.2%), T (28.8%), and G (13.4%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. The extended termination-associated sequence domain, the central conserved domain and the conserved sequence block domain are defined in the mitochondrial genome control region of the Ussuri shrew. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. The five Sorex species formed a monophyletic group with the high bootstrap value (100%) in all examinations.
format Online
Article
Text
id pubmed-7800820
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78008202021-01-19 Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China Zhu, Liu Xin-Min, Tian Zhi-Min, Jin Ming, Dong Jun-Sheng, Zhang Jian-Yu, Du Mitochondrial DNA B Resour Mitogenome Announcement The complete mitogenome sequence of the Ussuri shrew (Sorex mirabilis) was determined using long PCR. The genome was 17,315 bp in length and contained 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, one origin of L strand replication, and one control region. The overall base composition of the heavy strand is A (32.6%), C (25.2%), T (28.8%), and G (13.4%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. The extended termination-associated sequence domain, the central conserved domain and the conserved sequence block domain are defined in the mitochondrial genome control region of the Ussuri shrew. Mitochondrial genome analyses based on MP, ML, NJ, and Bayesian analyses yielded identical phylogenetic trees. The five Sorex species formed a monophyletic group with the high bootstrap value (100%) in all examinations. Taylor & Francis 2017-09-11 /pmc/articles/PMC7800820/ /pubmed/33473932 http://dx.doi.org/10.1080/23802359.2017.1375873 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Zhu, Liu
Xin-Min, Tian
Zhi-Min, Jin
Ming, Dong
Jun-Sheng, Zhang
Jian-Yu, Du
Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China
title Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China
title_full Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China
title_fullStr Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China
title_full_unstemmed Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China
title_short Sequencing and analysis of the complete mitochondrial genome of the Ussuri shrew (Sorex mirabilis) from China
title_sort sequencing and analysis of the complete mitochondrial genome of the ussuri shrew (sorex mirabilis) from china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800820/
https://www.ncbi.nlm.nih.gov/pubmed/33473932
http://dx.doi.org/10.1080/23802359.2017.1375873
work_keys_str_mv AT zhuliu sequencingandanalysisofthecompletemitochondrialgenomeoftheussurishrewsorexmirabilisfromchina
AT xinmintian sequencingandanalysisofthecompletemitochondrialgenomeoftheussurishrewsorexmirabilisfromchina
AT zhiminjin sequencingandanalysisofthecompletemitochondrialgenomeoftheussurishrewsorexmirabilisfromchina
AT mingdong sequencingandanalysisofthecompletemitochondrialgenomeoftheussurishrewsorexmirabilisfromchina
AT junshengzhang sequencingandanalysisofthecompletemitochondrialgenomeoftheussurishrewsorexmirabilisfromchina
AT jianyudu sequencingandanalysisofthecompletemitochondrialgenomeoftheussurishrewsorexmirabilisfromchina