The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)

Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadrip...

Descripción completa

Detalles Bibliográficos
Autores principales: Yu, Yeisoo, Lee, Hyun-Oh, Chin, Joong Hyoun, Park, Han Yong, Yoo, Soo-Cheul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800824/
https://www.ncbi.nlm.nih.gov/pubmed/33473995
http://dx.doi.org/10.1080/23802359.2017.1407710
_version_ 1783635438430322688
author Yu, Yeisoo
Lee, Hyun-Oh
Chin, Joong Hyoun
Park, Han Yong
Yoo, Soo-Cheul
author_facet Yu, Yeisoo
Lee, Hyun-Oh
Chin, Joong Hyoun
Park, Han Yong
Yoo, Soo-Cheul
author_sort Yu, Yeisoo
collection PubMed
description Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species.
format Online
Article
Text
id pubmed-7800824
institution National Center for Biotechnology Information
language English
publishDate 2017
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78008242021-01-19 The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae) Yu, Yeisoo Lee, Hyun-Oh Chin, Joong Hyoun Park, Han Yong Yoo, Soo-Cheul Mitochondrial DNA B Resour Mitogenome Announcement Rice (Oryza sativa) is the predominant staple food crop belonging to the Poaceae family. In this study, complete chloroplast genome sequence of O. sativa aus-type variety Nagina-22 was characterized through de novo assembly. The genome is a circular DNA molecule of 134,503 bp and has typical quadripartite structures including large single copy region (80,548 bp), small single copy region (12,347 bp), and a pair of inverted repeats (20,804 bp). A total of 120 genes were predicted in the genome, including 77 protein-coding genes, 8 open reading frame genes, 31 tRNA genes, and 4 rRNA genes. Phylogenetic analysis confirmed a close taxonomical relationship with O. sativa ssp. Indica species. Taylor & Francis 2017-11-25 /pmc/articles/PMC7800824/ /pubmed/33473995 http://dx.doi.org/10.1080/23802359.2017.1407710 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Yu, Yeisoo
Lee, Hyun-Oh
Chin, Joong Hyoun
Park, Han Yong
Yoo, Soo-Cheul
The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)
title The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)
title_full The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)
title_fullStr The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)
title_full_unstemmed The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)
title_short The complete chloroplast genome sequence of Oryza sativa aus-type variety Nagina-22 (Poaceae)
title_sort complete chloroplast genome sequence of oryza sativa aus-type variety nagina-22 (poaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800824/
https://www.ncbi.nlm.nih.gov/pubmed/33473995
http://dx.doi.org/10.1080/23802359.2017.1407710
work_keys_str_mv AT yuyeisoo thecompletechloroplastgenomesequenceoforyzasativaaustypevarietynagina22poaceae
AT leehyunoh thecompletechloroplastgenomesequenceoforyzasativaaustypevarietynagina22poaceae
AT chinjoonghyoun thecompletechloroplastgenomesequenceoforyzasativaaustypevarietynagina22poaceae
AT parkhanyong thecompletechloroplastgenomesequenceoforyzasativaaustypevarietynagina22poaceae
AT yoosoocheul thecompletechloroplastgenomesequenceoforyzasativaaustypevarietynagina22poaceae
AT yuyeisoo completechloroplastgenomesequenceoforyzasativaaustypevarietynagina22poaceae
AT leehyunoh completechloroplastgenomesequenceoforyzasativaaustypevarietynagina22poaceae
AT chinjoonghyoun completechloroplastgenomesequenceoforyzasativaaustypevarietynagina22poaceae
AT parkhanyong completechloroplastgenomesequenceoforyzasativaaustypevarietynagina22poaceae
AT yoosoocheul completechloroplastgenomesequenceoforyzasativaaustypevarietynagina22poaceae

Ejemplares similares