Complete chloroplast genome of the tree fern Alsophila podophylla (Cyatheaceae)

The chloroplast genome of the tree fern Alsophila podophylla has been completely sequenced. The genome is 166,151 bp in size and features a typical quadripartite structure with the large (LSC, 86,762 bp) and small single copy (SSC, 21,641 bp) regions separated by a pair of inverted repeats (IRs, 28,...

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Autores principales: Liu, Shanshan, Ping, Jingyao, Wang, Zhen, Wang, Ting, Su, Yingjuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800846/
https://www.ncbi.nlm.nih.gov/pubmed/33474061
http://dx.doi.org/10.1080/23802359.2017.1419095
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author Liu, Shanshan
Ping, Jingyao
Wang, Zhen
Wang, Ting
Su, Yingjuan
author_facet Liu, Shanshan
Ping, Jingyao
Wang, Zhen
Wang, Ting
Su, Yingjuan
author_sort Liu, Shanshan
collection PubMed
description The chloroplast genome of the tree fern Alsophila podophylla has been completely sequenced. The genome is 166,151 bp in size and features a typical quadripartite structure with the large (LSC, 86,762 bp) and small single copy (SSC, 21,641 bp) regions separated by a pair of inverted repeats (IRs, 28,874 bp each). It encodes 133 genes including 91 protein-coding genes, 33 tRNA genes, eight rRNA genes, and one pseudogene. Maximum-likelihood tree indicates that A. podophylla is sister to A. spinulosa. This work provides a solid molecular resource for surveying phylogeny and chloroplast genomics of ferns.
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spelling pubmed-78008462021-01-19 Complete chloroplast genome of the tree fern Alsophila podophylla (Cyatheaceae) Liu, Shanshan Ping, Jingyao Wang, Zhen Wang, Ting Su, Yingjuan Mitochondrial DNA B Resour Mitogenome Announcement The chloroplast genome of the tree fern Alsophila podophylla has been completely sequenced. The genome is 166,151 bp in size and features a typical quadripartite structure with the large (LSC, 86,762 bp) and small single copy (SSC, 21,641 bp) regions separated by a pair of inverted repeats (IRs, 28,874 bp each). It encodes 133 genes including 91 protein-coding genes, 33 tRNA genes, eight rRNA genes, and one pseudogene. Maximum-likelihood tree indicates that A. podophylla is sister to A. spinulosa. This work provides a solid molecular resource for surveying phylogeny and chloroplast genomics of ferns. Taylor & Francis 2017-12-22 /pmc/articles/PMC7800846/ /pubmed/33474061 http://dx.doi.org/10.1080/23802359.2017.1419095 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Liu, Shanshan
Ping, Jingyao
Wang, Zhen
Wang, Ting
Su, Yingjuan
Complete chloroplast genome of the tree fern Alsophila podophylla (Cyatheaceae)
title Complete chloroplast genome of the tree fern Alsophila podophylla (Cyatheaceae)
title_full Complete chloroplast genome of the tree fern Alsophila podophylla (Cyatheaceae)
title_fullStr Complete chloroplast genome of the tree fern Alsophila podophylla (Cyatheaceae)
title_full_unstemmed Complete chloroplast genome of the tree fern Alsophila podophylla (Cyatheaceae)
title_short Complete chloroplast genome of the tree fern Alsophila podophylla (Cyatheaceae)
title_sort complete chloroplast genome of the tree fern alsophila podophylla (cyatheaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800846/
https://www.ncbi.nlm.nih.gov/pubmed/33474061
http://dx.doi.org/10.1080/23802359.2017.1419095
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