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The complete chloroplast genome sequences of little millet (Panicum sumatrense Roth ex Roem. and Schult.) (Poaceae)

Little millet, Panicum sumatrense Roth ex Roem. & Schult., is an important cultivated species under the tribe Paniceae, sub-family Panicoideae and family Poaceae. In this study, for the first time we sequenced the complete chloroplast (cp) genome of P. sumatrense to investigate their phylogeneti...

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Autores principales: Sebastin, Raveendar, Lee, Gi-An, Lee, Kyung Jun, Shin, Myoung-Jae, Cho, Gyu-Taek, Lee, Jung-Ro, Ma, Kyung-Ho, Chung, Jong-Wook
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800850/
https://www.ncbi.nlm.nih.gov/pubmed/33474296
http://dx.doi.org/10.1080/23802359.2018.1483771
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author Sebastin, Raveendar
Lee, Gi-An
Lee, Kyung Jun
Shin, Myoung-Jae
Cho, Gyu-Taek
Lee, Jung-Ro
Ma, Kyung-Ho
Chung, Jong-Wook
author_facet Sebastin, Raveendar
Lee, Gi-An
Lee, Kyung Jun
Shin, Myoung-Jae
Cho, Gyu-Taek
Lee, Jung-Ro
Ma, Kyung-Ho
Chung, Jong-Wook
author_sort Sebastin, Raveendar
collection PubMed
description Little millet, Panicum sumatrense Roth ex Roem. & Schult., is an important cultivated species under the tribe Paniceae, sub-family Panicoideae and family Poaceae. In this study, for the first time we sequenced the complete chloroplast (cp) genome of P. sumatrense to investigate their phylogenetic relationship in the family Poaceae. The complete cp genome sequence of P. sumatrense is 139,384 bp in length with 38.6% overall GC content and exhibits a typical quadripartite structure comprising one pair of inverted repeats (22,723 bp) separated by a small single-copy region (12,583 bp) and a large single-copy region (81,355 bp). The P. sumatrense cp genome encodes 125 unique genes, which include 91 protein-coding genes, 4 rRNA genes, 30 tRNA genes, and 20 genes were duplicated in the inverted repeat region. This newly determined cp genome (P. sumatrense) could be valuable information for the breeding programs of this cereal crops in the family Poaceae.
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spelling pubmed-78008502021-01-19 The complete chloroplast genome sequences of little millet (Panicum sumatrense Roth ex Roem. and Schult.) (Poaceae) Sebastin, Raveendar Lee, Gi-An Lee, Kyung Jun Shin, Myoung-Jae Cho, Gyu-Taek Lee, Jung-Ro Ma, Kyung-Ho Chung, Jong-Wook Mitochondrial DNA B Resour Mitogenome Announcement Little millet, Panicum sumatrense Roth ex Roem. & Schult., is an important cultivated species under the tribe Paniceae, sub-family Panicoideae and family Poaceae. In this study, for the first time we sequenced the complete chloroplast (cp) genome of P. sumatrense to investigate their phylogenetic relationship in the family Poaceae. The complete cp genome sequence of P. sumatrense is 139,384 bp in length with 38.6% overall GC content and exhibits a typical quadripartite structure comprising one pair of inverted repeats (22,723 bp) separated by a small single-copy region (12,583 bp) and a large single-copy region (81,355 bp). The P. sumatrense cp genome encodes 125 unique genes, which include 91 protein-coding genes, 4 rRNA genes, 30 tRNA genes, and 20 genes were duplicated in the inverted repeat region. This newly determined cp genome (P. sumatrense) could be valuable information for the breeding programs of this cereal crops in the family Poaceae. Taylor & Francis 2018-06-26 /pmc/articles/PMC7800850/ /pubmed/33474296 http://dx.doi.org/10.1080/23802359.2018.1483771 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Sebastin, Raveendar
Lee, Gi-An
Lee, Kyung Jun
Shin, Myoung-Jae
Cho, Gyu-Taek
Lee, Jung-Ro
Ma, Kyung-Ho
Chung, Jong-Wook
The complete chloroplast genome sequences of little millet (Panicum sumatrense Roth ex Roem. and Schult.) (Poaceae)
title The complete chloroplast genome sequences of little millet (Panicum sumatrense Roth ex Roem. and Schult.) (Poaceae)
title_full The complete chloroplast genome sequences of little millet (Panicum sumatrense Roth ex Roem. and Schult.) (Poaceae)
title_fullStr The complete chloroplast genome sequences of little millet (Panicum sumatrense Roth ex Roem. and Schult.) (Poaceae)
title_full_unstemmed The complete chloroplast genome sequences of little millet (Panicum sumatrense Roth ex Roem. and Schult.) (Poaceae)
title_short The complete chloroplast genome sequences of little millet (Panicum sumatrense Roth ex Roem. and Schult.) (Poaceae)
title_sort complete chloroplast genome sequences of little millet (panicum sumatrense roth ex roem. and schult.) (poaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800850/
https://www.ncbi.nlm.nih.gov/pubmed/33474296
http://dx.doi.org/10.1080/23802359.2018.1483771
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