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The complete chloroplast genome of Solanum berthaultii, one of the potato wild relative species
Solanum berthaultii is a wild species belonging to Solanaceae family. The complete chloroplast genome of S. berthaultii was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. berthaultii was 155,533 bp in length and consisted of 25,593 ...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2017
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800855/ https://www.ncbi.nlm.nih.gov/pubmed/33473725 http://dx.doi.org/10.1080/23802359.2017.1285213 |
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author | Park, Tae-Ho |
author_facet | Park, Tae-Ho |
author_sort | Park, Tae-Ho |
collection | PubMed |
description | Solanum berthaultii is a wild species belonging to Solanaceae family. The complete chloroplast genome of S. berthaultii was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. berthaultii was 155,533 bp in length and consisted of 25,593 bp of a pair of inverted repeats, 18,372 bp of small single copy and 85,975 bp of large single-copy regions. 158 genes were annotated including 105 protein-coding, 45 tRNA, and 8 rRNA genes. Maximum-likelihood phylogenetic analysis with eight Solanaceae species revealed that S. berthaultii is most closely grouped with S. tuberosum. |
format | Online Article Text |
id | pubmed-7800855 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78008552021-01-19 The complete chloroplast genome of Solanum berthaultii, one of the potato wild relative species Park, Tae-Ho Mitochondrial DNA B Resour Mitogenome Announcement Solanum berthaultii is a wild species belonging to Solanaceae family. The complete chloroplast genome of S. berthaultii was constituted by de novo assembly using a small amount of whole genome sequencing data. The chloroplast genome of S. berthaultii was 155,533 bp in length and consisted of 25,593 bp of a pair of inverted repeats, 18,372 bp of small single copy and 85,975 bp of large single-copy regions. 158 genes were annotated including 105 protein-coding, 45 tRNA, and 8 rRNA genes. Maximum-likelihood phylogenetic analysis with eight Solanaceae species revealed that S. berthaultii is most closely grouped with S. tuberosum. Taylor & Francis 2017-02-06 /pmc/articles/PMC7800855/ /pubmed/33473725 http://dx.doi.org/10.1080/23802359.2017.1285213 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Park, Tae-Ho The complete chloroplast genome of Solanum berthaultii, one of the potato wild relative species |
title | The complete chloroplast genome of Solanum berthaultii, one of the potato wild relative species |
title_full | The complete chloroplast genome of Solanum berthaultii, one of the potato wild relative species |
title_fullStr | The complete chloroplast genome of Solanum berthaultii, one of the potato wild relative species |
title_full_unstemmed | The complete chloroplast genome of Solanum berthaultii, one of the potato wild relative species |
title_short | The complete chloroplast genome of Solanum berthaultii, one of the potato wild relative species |
title_sort | complete chloroplast genome of solanum berthaultii, one of the potato wild relative species |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800855/ https://www.ncbi.nlm.nih.gov/pubmed/33473725 http://dx.doi.org/10.1080/23802359.2017.1285213 |
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