The plastid genome of Vanillon (Vanilla pompona, Orchidaceae)

This study presents the complete sequence of Vanilla pompona chloroplast genome. This 148,009 bp long genome consist of 107 genes out of which 30 of them are tRNA, 4 rRNA. Fairly long inverted repeat regions (IR) and large single-copy (LSC) of length 29,807 and 86,358 bp, respectively, were detected...

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Detalles Bibliográficos
Autores principales: Amiryousefi, Ali, Hyvönen, Jaakko, Poczai, Péter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800859/
https://www.ncbi.nlm.nih.gov/pubmed/33473949
http://dx.doi.org/10.1080/23802359.2017.1383201
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author Amiryousefi, Ali
Hyvönen, Jaakko
Poczai, Péter
author_facet Amiryousefi, Ali
Hyvönen, Jaakko
Poczai, Péter
author_sort Amiryousefi, Ali
collection PubMed
description This study presents the complete sequence of Vanilla pompona chloroplast genome. This 148,009 bp long genome consist of 107 genes out of which 30 of them are tRNA, 4 rRNA. Fairly long inverted repeat regions (IR) and large single-copy (LSC) of length 29,807 and 86,358 bp, respectively, were detected. This means an exceptionally short single-copy (SSC) region with only 2037 bp. This truncation of the SSC is due to multiple translocation of ndh genes to the mitochondrion as in majority of the Orchidaceae and especially in the genus Vanilla. The phylogeny presented here meaningfully places Vanillon within the orchid family.
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spelling pubmed-78008592021-01-19 The plastid genome of Vanillon (Vanilla pompona, Orchidaceae) Amiryousefi, Ali Hyvönen, Jaakko Poczai, Péter Mitochondrial DNA B Resour Mitogenome Announcement This study presents the complete sequence of Vanilla pompona chloroplast genome. This 148,009 bp long genome consist of 107 genes out of which 30 of them are tRNA, 4 rRNA. Fairly long inverted repeat regions (IR) and large single-copy (LSC) of length 29,807 and 86,358 bp, respectively, were detected. This means an exceptionally short single-copy (SSC) region with only 2037 bp. This truncation of the SSC is due to multiple translocation of ndh genes to the mitochondrion as in majority of the Orchidaceae and especially in the genus Vanilla. The phylogeny presented here meaningfully places Vanillon within the orchid family. Taylor & Francis 2017-09-29 /pmc/articles/PMC7800859/ /pubmed/33473949 http://dx.doi.org/10.1080/23802359.2017.1383201 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Amiryousefi, Ali
Hyvönen, Jaakko
Poczai, Péter
The plastid genome of Vanillon (Vanilla pompona, Orchidaceae)
title The plastid genome of Vanillon (Vanilla pompona, Orchidaceae)
title_full The plastid genome of Vanillon (Vanilla pompona, Orchidaceae)
title_fullStr The plastid genome of Vanillon (Vanilla pompona, Orchidaceae)
title_full_unstemmed The plastid genome of Vanillon (Vanilla pompona, Orchidaceae)
title_short The plastid genome of Vanillon (Vanilla pompona, Orchidaceae)
title_sort plastid genome of vanillon (vanilla pompona, orchidaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800859/
https://www.ncbi.nlm.nih.gov/pubmed/33473949
http://dx.doi.org/10.1080/23802359.2017.1383201
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