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Complete mitochondrial genome and phylogenetic analysis of Callorhinus ursinus: an endangered species from South Korea
We present the complete mitochondrial genome and a phylogenetic analysis of Callorhinus ursinus, the northern fur seal, determined using Illumina next-generation sequencing (NGS) technology. The total length of the mitogenome was 17,154 bp, which consisted of 13 protein-coding genes, two ribosomal R...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800871/ https://www.ncbi.nlm.nih.gov/pubmed/33474218 http://dx.doi.org/10.1080/23802359.2018.1457992 |
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author | Lee, Seon-Mi Lee, Mu-Yeong Jeon, Hey Sook Kim, Jung A. Lee, Sang-Hwa An, Junghwa |
author_facet | Lee, Seon-Mi Lee, Mu-Yeong Jeon, Hey Sook Kim, Jung A. Lee, Sang-Hwa An, Junghwa |
author_sort | Lee, Seon-Mi |
collection | PubMed |
description | We present the complete mitochondrial genome and a phylogenetic analysis of Callorhinus ursinus, the northern fur seal, determined using Illumina next-generation sequencing (NGS) technology. The total length of the mitogenome was 17,154 bp, which consisted of 13 protein-coding genes, two ribosomal RNA genes, 22 tRNA genes, and one control region. The base composition of the entire mitogenome was 33.5% (A), 26.3% (C), 13.9% (G), and 26.3% (T) with an A + T bias of 59.8%. The control region contained two types of tandem repeats. A neighbour-joining (NJ) tree was constructed and comprised two clades with C. ursinus forming a monophyletic group. Data produced in this study will aid exploration of the genetic diversity of endangered C. ursinus and contribute to molecular identification of this species. |
format | Online Article Text |
id | pubmed-7800871 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78008712021-01-19 Complete mitochondrial genome and phylogenetic analysis of Callorhinus ursinus: an endangered species from South Korea Lee, Seon-Mi Lee, Mu-Yeong Jeon, Hey Sook Kim, Jung A. Lee, Sang-Hwa An, Junghwa Mitochondrial DNA B Resour Mitogenome Announcement We present the complete mitochondrial genome and a phylogenetic analysis of Callorhinus ursinus, the northern fur seal, determined using Illumina next-generation sequencing (NGS) technology. The total length of the mitogenome was 17,154 bp, which consisted of 13 protein-coding genes, two ribosomal RNA genes, 22 tRNA genes, and one control region. The base composition of the entire mitogenome was 33.5% (A), 26.3% (C), 13.9% (G), and 26.3% (T) with an A + T bias of 59.8%. The control region contained two types of tandem repeats. A neighbour-joining (NJ) tree was constructed and comprised two clades with C. ursinus forming a monophyletic group. Data produced in this study will aid exploration of the genetic diversity of endangered C. ursinus and contribute to molecular identification of this species. Taylor & Francis 2018-04-23 /pmc/articles/PMC7800871/ /pubmed/33474218 http://dx.doi.org/10.1080/23802359.2018.1457992 Text en © 2018 National Institute of Biological Resource. Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Lee, Seon-Mi Lee, Mu-Yeong Jeon, Hey Sook Kim, Jung A. Lee, Sang-Hwa An, Junghwa Complete mitochondrial genome and phylogenetic analysis of Callorhinus ursinus: an endangered species from South Korea |
title | Complete mitochondrial genome and phylogenetic analysis of Callorhinus ursinus: an endangered species from South Korea |
title_full | Complete mitochondrial genome and phylogenetic analysis of Callorhinus ursinus: an endangered species from South Korea |
title_fullStr | Complete mitochondrial genome and phylogenetic analysis of Callorhinus ursinus: an endangered species from South Korea |
title_full_unstemmed | Complete mitochondrial genome and phylogenetic analysis of Callorhinus ursinus: an endangered species from South Korea |
title_short | Complete mitochondrial genome and phylogenetic analysis of Callorhinus ursinus: an endangered species from South Korea |
title_sort | complete mitochondrial genome and phylogenetic analysis of callorhinus ursinus: an endangered species from south korea |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800871/ https://www.ncbi.nlm.nih.gov/pubmed/33474218 http://dx.doi.org/10.1080/23802359.2018.1457992 |
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