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The complete chloroplast genome of Cycas Szechuanensis, an extremely endangered species
In this study, we determined the complete chloroplast genome of Cycas szechuanensis (Cycadaceae, Cycas) using the Illumina sequencing data. The genome is 162,083 bp in length, including a pair of inverted repeats (IRs) of 25,003 bp each, which are separated by a large single-copy region (LSC) and a...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800925/ https://www.ncbi.nlm.nih.gov/pubmed/33474385 http://dx.doi.org/10.1080/23802359.2018.1507635 |
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author | Wang, Yaling Wang, Zefu Zhang, Lei Yang, Xiaoyue |
author_facet | Wang, Yaling Wang, Zefu Zhang, Lei Yang, Xiaoyue |
author_sort | Wang, Yaling |
collection | PubMed |
description | In this study, we determined the complete chloroplast genome of Cycas szechuanensis (Cycadaceae, Cycas) using the Illumina sequencing data. The genome is 162,083 bp in length, including a pair of inverted repeats (IRs) of 25,003 bp each, which are separated by a large single-copy region (LSC) and a small single-copy region (SSC) with the size of 88,970 and 23,108 bp, respectively. The genome comprises 131 encoded genes in total, including 86 protein-coding genes (82 PCG species), 8 ribosomal RNA genes (4 rRNA species), and 37 transfer RNA genes (30 tRNA species). The overall GC content of the C. szechuanensis chloroplast genome is 39.42%, while the LSC, SSC, and IRs occupy 38.70, 42.03 and 36.52%, respectively. Based on complete chloroplast genome sequences from 13 species, we reconstructed the phylogenetic relationship of the 13 species and found that C. szechuanensis is closely related to C. debaoensis. |
format | Online Article Text |
id | pubmed-7800925 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78009252021-01-19 The complete chloroplast genome of Cycas Szechuanensis, an extremely endangered species Wang, Yaling Wang, Zefu Zhang, Lei Yang, Xiaoyue Mitochondrial DNA B Resour Mitogenome Announcement In this study, we determined the complete chloroplast genome of Cycas szechuanensis (Cycadaceae, Cycas) using the Illumina sequencing data. The genome is 162,083 bp in length, including a pair of inverted repeats (IRs) of 25,003 bp each, which are separated by a large single-copy region (LSC) and a small single-copy region (SSC) with the size of 88,970 and 23,108 bp, respectively. The genome comprises 131 encoded genes in total, including 86 protein-coding genes (82 PCG species), 8 ribosomal RNA genes (4 rRNA species), and 37 transfer RNA genes (30 tRNA species). The overall GC content of the C. szechuanensis chloroplast genome is 39.42%, while the LSC, SSC, and IRs occupy 38.70, 42.03 and 36.52%, respectively. Based on complete chloroplast genome sequences from 13 species, we reconstructed the phylogenetic relationship of the 13 species and found that C. szechuanensis is closely related to C. debaoensis. Taylor & Francis 2018-09-10 /pmc/articles/PMC7800925/ /pubmed/33474385 http://dx.doi.org/10.1080/23802359.2018.1507635 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Yaling Wang, Zefu Zhang, Lei Yang, Xiaoyue The complete chloroplast genome of Cycas Szechuanensis, an extremely endangered species |
title | The complete chloroplast genome of Cycas Szechuanensis, an extremely endangered species |
title_full | The complete chloroplast genome of Cycas Szechuanensis, an extremely endangered species |
title_fullStr | The complete chloroplast genome of Cycas Szechuanensis, an extremely endangered species |
title_full_unstemmed | The complete chloroplast genome of Cycas Szechuanensis, an extremely endangered species |
title_short | The complete chloroplast genome of Cycas Szechuanensis, an extremely endangered species |
title_sort | complete chloroplast genome of cycas szechuanensis, an extremely endangered species |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800925/ https://www.ncbi.nlm.nih.gov/pubmed/33474385 http://dx.doi.org/10.1080/23802359.2018.1507635 |
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