Cargando…
The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA
Analysis of Phrynosoma blainvillii Gray from Marina, Monterey County, California, using 150 bp paired-end Illumina sequences (Illumina, San Diego, CA) resulted in the assembly of its complete mitogenome. The mitogenome is 16,946 bp in length and contains a putative origin of light strand replication...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Taylor & Francis
2017
|
| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800929/ https://www.ncbi.nlm.nih.gov/pubmed/33474009 http://dx.doi.org/10.1080/23802359.2017.1407706 |
| _version_ | 1783635463329808384 |
|---|---|
| author | Ayala, Laura Boo, Ga Hun Boo, Sung Min Cluff, Brandon Dayton, Gage H. Edwards, Leah Garcia, Armando Gomez, Mariana Jimenez, Thomas A. Hughey, Jeffery R. Huynh, Timothy Marquez, Natalia I. Meza, Ana I. Munoz, Alexis D. Perez, Cristina Pina, Dominic Porras, Michael Razo, Paola E. Rosales, Alexis Rusconi, Bailee Salvador, Noel Steinhardt, Alicia Tinajero, Ruben Wheat, Nancy Wong, Frances L. Wright, Ann |
| author_facet | Ayala, Laura Boo, Ga Hun Boo, Sung Min Cluff, Brandon Dayton, Gage H. Edwards, Leah Garcia, Armando Gomez, Mariana Jimenez, Thomas A. Hughey, Jeffery R. Huynh, Timothy Marquez, Natalia I. Meza, Ana I. Munoz, Alexis D. Perez, Cristina Pina, Dominic Porras, Michael Razo, Paola E. Rosales, Alexis Rusconi, Bailee Salvador, Noel Steinhardt, Alicia Tinajero, Ruben Wheat, Nancy Wong, Frances L. Wright, Ann |
| author_sort | Ayala, Laura |
| collection | PubMed |
| description | Analysis of Phrynosoma blainvillii Gray from Marina, Monterey County, California, using 150 bp paired-end Illumina sequences (Illumina, San Diego, CA) resulted in the assembly of its complete mitogenome. The mitogenome is 16,946 bp in length and contains a putative origin of light strand replication (OL), control region, 22 tRNA, 2 rRNA, and 13 protein-coding genes. Its content and organization are similar to other Squamata. Phylogenetic analysis of P. blainvillii resolves it in a clade with P. sherbrookei Nieto-Montes de Oca, Arenas-Moreno, Beltrán-Sánchez & Leaché, sister in position to Uma notata Baird. Mitochondrial marker analysis of P. blainvillii from Marina shows that it belongs to a coastal Santa Lucia Mountain Range haplogroup that is distinct from other populations of P. blainvillii in California. |
| format | Online Article Text |
| id | pubmed-7800929 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2017 |
| publisher | Taylor & Francis |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-78009292021-01-19 The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA Ayala, Laura Boo, Ga Hun Boo, Sung Min Cluff, Brandon Dayton, Gage H. Edwards, Leah Garcia, Armando Gomez, Mariana Jimenez, Thomas A. Hughey, Jeffery R. Huynh, Timothy Marquez, Natalia I. Meza, Ana I. Munoz, Alexis D. Perez, Cristina Pina, Dominic Porras, Michael Razo, Paola E. Rosales, Alexis Rusconi, Bailee Salvador, Noel Steinhardt, Alicia Tinajero, Ruben Wheat, Nancy Wong, Frances L. Wright, Ann Mitochondrial DNA B Resour Mitogenome Announcement Analysis of Phrynosoma blainvillii Gray from Marina, Monterey County, California, using 150 bp paired-end Illumina sequences (Illumina, San Diego, CA) resulted in the assembly of its complete mitogenome. The mitogenome is 16,946 bp in length and contains a putative origin of light strand replication (OL), control region, 22 tRNA, 2 rRNA, and 13 protein-coding genes. Its content and organization are similar to other Squamata. Phylogenetic analysis of P. blainvillii resolves it in a clade with P. sherbrookei Nieto-Montes de Oca, Arenas-Moreno, Beltrán-Sánchez & Leaché, sister in position to Uma notata Baird. Mitochondrial marker analysis of P. blainvillii from Marina shows that it belongs to a coastal Santa Lucia Mountain Range haplogroup that is distinct from other populations of P. blainvillii in California. Taylor & Francis 2017-11-25 /pmc/articles/PMC7800929/ /pubmed/33474009 http://dx.doi.org/10.1080/23802359.2017.1407706 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
| spellingShingle | Mitogenome Announcement Ayala, Laura Boo, Ga Hun Boo, Sung Min Cluff, Brandon Dayton, Gage H. Edwards, Leah Garcia, Armando Gomez, Mariana Jimenez, Thomas A. Hughey, Jeffery R. Huynh, Timothy Marquez, Natalia I. Meza, Ana I. Munoz, Alexis D. Perez, Cristina Pina, Dominic Porras, Michael Razo, Paola E. Rosales, Alexis Rusconi, Bailee Salvador, Noel Steinhardt, Alicia Tinajero, Ruben Wheat, Nancy Wong, Frances L. Wright, Ann The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title | The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title_full | The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title_fullStr | The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title_full_unstemmed | The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title_short | The complete mitochondrial genome of the horned lizard Phrynosoma blainvillii (Squamata: Phrynosomatidae) from California, USA |
| title_sort | complete mitochondrial genome of the horned lizard phrynosoma blainvillii (squamata: phrynosomatidae) from california, usa |
| topic | Mitogenome Announcement |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800929/ https://www.ncbi.nlm.nih.gov/pubmed/33474009 http://dx.doi.org/10.1080/23802359.2017.1407706 |
| work_keys_str_mv | AT ayalalaura thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT boogahun thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT boosungmin thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT cluffbrandon thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT daytongageh thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT edwardsleah thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT garciaarmando thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT gomezmariana thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT jimenezthomasa thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT hugheyjefferyr thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT huynhtimothy thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT marqueznataliai thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT mezaanai thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT munozalexisd thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT perezcristina thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT pinadominic thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT porrasmichael thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT razopaolae thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT rosalesalexis thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT rusconibailee thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT salvadornoel thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT steinhardtalicia thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT tinajeroruben thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT wheatnancy thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT wongfrancesl thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT wrightann thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT thecompletemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT ayalalaura completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT boogahun completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT boosungmin completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT cluffbrandon completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT daytongageh completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT edwardsleah completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT garciaarmando completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT gomezmariana completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT jimenezthomasa completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT hugheyjefferyr completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT huynhtimothy completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT marqueznataliai completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT mezaanai completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT munozalexisd completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT perezcristina completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT pinadominic completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT porrasmichael completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT razopaolae completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT rosalesalexis completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT rusconibailee completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT salvadornoel completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT steinhardtalicia completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT tinajeroruben completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT wheatnancy completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT wongfrancesl completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT wrightann completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa AT completemitochondrialgenomeofthehornedlizardphrynosomablainvilliisquamataphrynosomatidaefromcaliforniausa |