Cargando…

Characterization of the complete chloroplast genome sequence of Sphagneticola calendulacea (Asteraceae)

Sphagneticola calendulacea is a valuable medicinal herb. With the spread of a congeneric invasive species Sphagneticola trilobata in South China, the already vulnerable S. calendulacea populations are being threatened further by natural hybridization with the invading species. In this study, we asse...

Descripción completa

Detalles Bibliográficos
Autores principales: Ng, Wei Lun, Zhou, Yubing, Zhou, Renchao, Wu, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800939/
https://www.ncbi.nlm.nih.gov/pubmed/33474403
http://dx.doi.org/10.1080/23802359.2018.1511846
_version_ 1783635465748873216
author Ng, Wei Lun
Zhou, Yubing
Zhou, Renchao
Wu, Wei
author_facet Ng, Wei Lun
Zhou, Yubing
Zhou, Renchao
Wu, Wei
author_sort Ng, Wei Lun
collection PubMed
description Sphagneticola calendulacea is a valuable medicinal herb. With the spread of a congeneric invasive species Sphagneticola trilobata in South China, the already vulnerable S. calendulacea populations are being threatened further by natural hybridization with the invading species. In this study, we assembled and characterized the complete chloroplast genome of S. calendulacea as a resource for future studies on this species. The chloroplast genome was 151,748 bp in size, with a large single-copy (LSC) region of 83,270 bp, a small single-copy (SSC) region of 18,348 bp, separated by two inverted repeat (IR) regions of 25,065 bp each. A total of 134 genes were predicted. Phylogenetic analysis showed close relationship between S. calendulacea and Eclipta prostrata within the Heliantheae tribe.
format Online
Article
Text
id pubmed-7800939
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78009392021-01-19 Characterization of the complete chloroplast genome sequence of Sphagneticola calendulacea (Asteraceae) Ng, Wei Lun Zhou, Yubing Zhou, Renchao Wu, Wei Mitochondrial DNA B Resour Mitogenome Announcement Sphagneticola calendulacea is a valuable medicinal herb. With the spread of a congeneric invasive species Sphagneticola trilobata in South China, the already vulnerable S. calendulacea populations are being threatened further by natural hybridization with the invading species. In this study, we assembled and characterized the complete chloroplast genome of S. calendulacea as a resource for future studies on this species. The chloroplast genome was 151,748 bp in size, with a large single-copy (LSC) region of 83,270 bp, a small single-copy (SSC) region of 18,348 bp, separated by two inverted repeat (IR) regions of 25,065 bp each. A total of 134 genes were predicted. Phylogenetic analysis showed close relationship between S. calendulacea and Eclipta prostrata within the Heliantheae tribe. Taylor & Francis 2018-10-27 /pmc/articles/PMC7800939/ /pubmed/33474403 http://dx.doi.org/10.1080/23802359.2018.1511846 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Ng, Wei Lun
Zhou, Yubing
Zhou, Renchao
Wu, Wei
Characterization of the complete chloroplast genome sequence of Sphagneticola calendulacea (Asteraceae)
title Characterization of the complete chloroplast genome sequence of Sphagneticola calendulacea (Asteraceae)
title_full Characterization of the complete chloroplast genome sequence of Sphagneticola calendulacea (Asteraceae)
title_fullStr Characterization of the complete chloroplast genome sequence of Sphagneticola calendulacea (Asteraceae)
title_full_unstemmed Characterization of the complete chloroplast genome sequence of Sphagneticola calendulacea (Asteraceae)
title_short Characterization of the complete chloroplast genome sequence of Sphagneticola calendulacea (Asteraceae)
title_sort characterization of the complete chloroplast genome sequence of sphagneticola calendulacea (asteraceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800939/
https://www.ncbi.nlm.nih.gov/pubmed/33474403
http://dx.doi.org/10.1080/23802359.2018.1511846
work_keys_str_mv AT ngweilun characterizationofthecompletechloroplastgenomesequenceofsphagneticolacalendulaceaasteraceae
AT zhouyubing characterizationofthecompletechloroplastgenomesequenceofsphagneticolacalendulaceaasteraceae
AT zhourenchao characterizationofthecompletechloroplastgenomesequenceofsphagneticolacalendulaceaasteraceae
AT wuwei characterizationofthecompletechloroplastgenomesequenceofsphagneticolacalendulaceaasteraceae