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The first complete plastome sequence from the family Sapotaceae, Pouteria campechiana (Kunth) Baehni
In this study, we determined the complete plastome sequence of Pouteria campechiana (Kunth) Baehni (Sapotaceae) (NCBI acc. no. KX426215). This is the first time a plastome from the Sapotaceae has been sequenced. The gene order and structure of the P. campechiana plastome are collinear with those of...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800956/ https://www.ncbi.nlm.nih.gov/pubmed/33473609 http://dx.doi.org/10.1080/23802359.2016.1233469 |
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author | Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Cheon, Se-Hwan Kim, Ki-Joong |
author_facet | Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Cheon, Se-Hwan Kim, Ki-Joong |
author_sort | Jo, Sangjin |
collection | PubMed |
description | In this study, we determined the complete plastome sequence of Pouteria campechiana (Kunth) Baehni (Sapotaceae) (NCBI acc. no. KX426215). This is the first time a plastome from the Sapotaceae has been sequenced. The gene order and structure of the P. campechiana plastome are collinear with those of the typical plastome of land plants. The complete plastome size is 157,922 bp in length and consists of a large single-copy region of 87,122 bp and a small single-copy region of 18,559 bp, which are separated by a pair of 26,120 bp-long inverted repeat regions. The overall A–T content of the plastome sequence is 63.2%. The plastome contains 113 genes, of which 79 are protein-coding genes, 30 are tRNA genes, and 4 are rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 91 simple sequence repeat loci were identified within the genome. Phylogenetic analysis revealed that P. campechiana is a sister group of the Primulaceae-Ebenaceae clade with 100% bootstrap support. |
format | Online Article Text |
id | pubmed-7800956 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78009562021-01-19 The first complete plastome sequence from the family Sapotaceae, Pouteria campechiana (Kunth) Baehni Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Cheon, Se-Hwan Kim, Ki-Joong Mitochondrial DNA B Resour Mitogenome Announcement In this study, we determined the complete plastome sequence of Pouteria campechiana (Kunth) Baehni (Sapotaceae) (NCBI acc. no. KX426215). This is the first time a plastome from the Sapotaceae has been sequenced. The gene order and structure of the P. campechiana plastome are collinear with those of the typical plastome of land plants. The complete plastome size is 157,922 bp in length and consists of a large single-copy region of 87,122 bp and a small single-copy region of 18,559 bp, which are separated by a pair of 26,120 bp-long inverted repeat regions. The overall A–T content of the plastome sequence is 63.2%. The plastome contains 113 genes, of which 79 are protein-coding genes, 30 are tRNA genes, and 4 are rRNA genes. Sixteen genes contain one intron and two genes have two introns. A total of 91 simple sequence repeat loci were identified within the genome. Phylogenetic analysis revealed that P. campechiana is a sister group of the Primulaceae-Ebenaceae clade with 100% bootstrap support. Taylor & Francis 2016-10-29 /pmc/articles/PMC7800956/ /pubmed/33473609 http://dx.doi.org/10.1080/23802359.2016.1233469 Text en © 2016 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/Licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/Licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/Licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Jo, Sangjin Kim, Hoe-Won Kim, Young-Kee Cheon, Se-Hwan Kim, Ki-Joong The first complete plastome sequence from the family Sapotaceae, Pouteria campechiana (Kunth) Baehni |
title | The first complete plastome sequence from the family Sapotaceae, Pouteria campechiana (Kunth) Baehni |
title_full | The first complete plastome sequence from the family Sapotaceae, Pouteria campechiana (Kunth) Baehni |
title_fullStr | The first complete plastome sequence from the family Sapotaceae, Pouteria campechiana (Kunth) Baehni |
title_full_unstemmed | The first complete plastome sequence from the family Sapotaceae, Pouteria campechiana (Kunth) Baehni |
title_short | The first complete plastome sequence from the family Sapotaceae, Pouteria campechiana (Kunth) Baehni |
title_sort | first complete plastome sequence from the family sapotaceae, pouteria campechiana (kunth) baehni |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800956/ https://www.ncbi.nlm.nih.gov/pubmed/33473609 http://dx.doi.org/10.1080/23802359.2016.1233469 |
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