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Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver
In this study, combining the liver transcripts from both sexes by RNA-Seq with DNA sequences by conventional PCRs, we have determined the complete mitogenome of Hainan medaka Oryzias curvinotus collected from the mangrove seawater of the Leizhou Peninsula in tropical South China (Accession no.: KY36...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800997/ https://www.ncbi.nlm.nih.gov/pubmed/33490443 http://dx.doi.org/10.1080/23802359.2017.1303340 |
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author | Wang, Zhongduo Long, Shuisheng Liao, Jian Huang, Chengqin Zhang, Hairui Huang, Shunkai Zhang, Yanping Liu, Li Guo, Yusong |
author_facet | Wang, Zhongduo Long, Shuisheng Liao, Jian Huang, Chengqin Zhang, Hairui Huang, Shunkai Zhang, Yanping Liu, Li Guo, Yusong |
author_sort | Wang, Zhongduo |
collection | PubMed |
description | In this study, combining the liver transcripts from both sexes by RNA-Seq with DNA sequences by conventional PCRs, we have determined the complete mitogenome of Hainan medaka Oryzias curvinotus collected from the mangrove seawater of the Leizhou Peninsula in tropical South China (Accession no.: KY364884). The mitochondrial genome is 16,676 bp, and its content and structure are highly homologous to those of other teleostean fishes, including 13 protein-coding genes (PCGs), 2 rRNAs, 22 tRNA and 1 control region. Among the PCGs, ATG is used as the initiation codon, except for GTG in COI gene. There are 7 overlapping genes with overlap lengths ranging from 1 to 10 nucleotides (nt), while ten intergenic regions with a total of 66 nt and a maximum interval of 37 nt between tRNA(Asn) and tRNA(Cys). Moreover, the data from RNA-Seq shows that the significant differences exist in the expression patterns of mitogenomes between male and female. |
format | Online Article Text |
id | pubmed-7800997 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78009972021-01-21 Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver Wang, Zhongduo Long, Shuisheng Liao, Jian Huang, Chengqin Zhang, Hairui Huang, Shunkai Zhang, Yanping Liu, Li Guo, Yusong Mitochondrial DNA B Resour Mitogenome Announcement In this study, combining the liver transcripts from both sexes by RNA-Seq with DNA sequences by conventional PCRs, we have determined the complete mitogenome of Hainan medaka Oryzias curvinotus collected from the mangrove seawater of the Leizhou Peninsula in tropical South China (Accession no.: KY364884). The mitochondrial genome is 16,676 bp, and its content and structure are highly homologous to those of other teleostean fishes, including 13 protein-coding genes (PCGs), 2 rRNAs, 22 tRNA and 1 control region. Among the PCGs, ATG is used as the initiation codon, except for GTG in COI gene. There are 7 overlapping genes with overlap lengths ranging from 1 to 10 nucleotides (nt), while ten intergenic regions with a total of 66 nt and a maximum interval of 37 nt between tRNA(Asn) and tRNA(Cys). Moreover, the data from RNA-Seq shows that the significant differences exist in the expression patterns of mitogenomes between male and female. Taylor & Francis 2017-03-21 /pmc/articles/PMC7800997/ /pubmed/33490443 http://dx.doi.org/10.1080/23802359.2017.1303340 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Wang, Zhongduo Long, Shuisheng Liao, Jian Huang, Chengqin Zhang, Hairui Huang, Shunkai Zhang, Yanping Liu, Li Guo, Yusong Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
title | Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
title_full | Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
title_fullStr | Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
title_full_unstemmed | Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
title_short | Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver |
title_sort | complete mitogenome of hainan medaka oryzias curvinotus (teleostei: beloniformes) and transcriptional differences between male and female liver |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800997/ https://www.ncbi.nlm.nih.gov/pubmed/33490443 http://dx.doi.org/10.1080/23802359.2017.1303340 |
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