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Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver

In this study, combining the liver transcripts from both sexes by RNA-Seq with DNA sequences by conventional PCRs, we have determined the complete mitogenome of Hainan medaka Oryzias curvinotus collected from the mangrove seawater of the Leizhou Peninsula in tropical South China (Accession no.: KY36...

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Autores principales: Wang, Zhongduo, Long, Shuisheng, Liao, Jian, Huang, Chengqin, Zhang, Hairui, Huang, Shunkai, Zhang, Yanping, Liu, Li, Guo, Yusong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800997/
https://www.ncbi.nlm.nih.gov/pubmed/33490443
http://dx.doi.org/10.1080/23802359.2017.1303340
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author Wang, Zhongduo
Long, Shuisheng
Liao, Jian
Huang, Chengqin
Zhang, Hairui
Huang, Shunkai
Zhang, Yanping
Liu, Li
Guo, Yusong
author_facet Wang, Zhongduo
Long, Shuisheng
Liao, Jian
Huang, Chengqin
Zhang, Hairui
Huang, Shunkai
Zhang, Yanping
Liu, Li
Guo, Yusong
author_sort Wang, Zhongduo
collection PubMed
description In this study, combining the liver transcripts from both sexes by RNA-Seq with DNA sequences by conventional PCRs, we have determined the complete mitogenome of Hainan medaka Oryzias curvinotus collected from the mangrove seawater of the Leizhou Peninsula in tropical South China (Accession no.: KY364884). The mitochondrial genome is 16,676 bp, and its content and structure are highly homologous to those of other teleostean fishes, including 13 protein-coding genes (PCGs), 2 rRNAs, 22 tRNA and 1 control region. Among the PCGs, ATG is used as the initiation codon, except for GTG in COI gene. There are 7 overlapping genes with overlap lengths ranging from 1 to 10 nucleotides (nt), while ten intergenic regions with a total of 66 nt and a maximum interval of 37 nt between tRNA(Asn) and tRNA(Cys). Moreover, the data from RNA-Seq shows that the significant differences exist in the expression patterns of mitogenomes between male and female.
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spelling pubmed-78009972021-01-21 Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver Wang, Zhongduo Long, Shuisheng Liao, Jian Huang, Chengqin Zhang, Hairui Huang, Shunkai Zhang, Yanping Liu, Li Guo, Yusong Mitochondrial DNA B Resour Mitogenome Announcement In this study, combining the liver transcripts from both sexes by RNA-Seq with DNA sequences by conventional PCRs, we have determined the complete mitogenome of Hainan medaka Oryzias curvinotus collected from the mangrove seawater of the Leizhou Peninsula in tropical South China (Accession no.: KY364884). The mitochondrial genome is 16,676 bp, and its content and structure are highly homologous to those of other teleostean fishes, including 13 protein-coding genes (PCGs), 2 rRNAs, 22 tRNA and 1 control region. Among the PCGs, ATG is used as the initiation codon, except for GTG in COI gene. There are 7 overlapping genes with overlap lengths ranging from 1 to 10 nucleotides (nt), while ten intergenic regions with a total of 66 nt and a maximum interval of 37 nt between tRNA(Asn) and tRNA(Cys). Moreover, the data from RNA-Seq shows that the significant differences exist in the expression patterns of mitogenomes between male and female. Taylor & Francis 2017-03-21 /pmc/articles/PMC7800997/ /pubmed/33490443 http://dx.doi.org/10.1080/23802359.2017.1303340 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Wang, Zhongduo
Long, Shuisheng
Liao, Jian
Huang, Chengqin
Zhang, Hairui
Huang, Shunkai
Zhang, Yanping
Liu, Li
Guo, Yusong
Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver
title Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver
title_full Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver
title_fullStr Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver
title_full_unstemmed Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver
title_short Complete mitogenome of Hainan medaka Oryzias curvinotus (Teleostei: Beloniformes) and transcriptional differences between male and female liver
title_sort complete mitogenome of hainan medaka oryzias curvinotus (teleostei: beloniformes) and transcriptional differences between male and female liver
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7800997/
https://www.ncbi.nlm.nih.gov/pubmed/33490443
http://dx.doi.org/10.1080/23802359.2017.1303340
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