Cargando…

The complete mitochondrial genome of Neopagetopsis ionah (Channichthyidae, neopagetopsis) with phylogenetic consideration

In this study, the complete mitochondrial genome of Neopagetopsis ionah was obtained, which was 17,634 bp including two ribosomal RNAs, 13 protein-coding genes, 22 transfer RNAs, and a non-coding control region. In 13 protein-coding genes, there types of initiation codon (ATC, ATG, and GTG) and four...

Descripción completa

Detalles Bibliográficos
Autores principales: Sang, Chengde, Liang, Shuzhang, Song, Wei, Huang, Hongliang, Jiang, Keji, Chen, Xuezhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801004/
https://www.ncbi.nlm.nih.gov/pubmed/33490576
http://dx.doi.org/10.1080/23802359.2018.1532350
_version_ 1783635480892407808
author Sang, Chengde
Liang, Shuzhang
Song, Wei
Huang, Hongliang
Jiang, Keji
Chen, Xuezhong
author_facet Sang, Chengde
Liang, Shuzhang
Song, Wei
Huang, Hongliang
Jiang, Keji
Chen, Xuezhong
author_sort Sang, Chengde
collection PubMed
description In this study, the complete mitochondrial genome of Neopagetopsis ionah was obtained, which was 17,634 bp including two ribosomal RNAs, 13 protein-coding genes, 22 transfer RNAs, and a non-coding control region. In 13 protein-coding genes, there types of initiation codon (ATC, ATG, and GTG) and four types of stop codons (TAA, TAG, TA, and T) were identified. Among the 22 transfer RNAs, eight tRNAs were encoded by L-strand. The length of D-loop was 1519 bp and its contents of A, T, C, and G were 26.9%, 27.6%, 17.5%, and 30%, respectively. The complete mtDNA sequences of N. ionah and other 13 species were used to reconstruct the phylogenetic tree suggested that N. ionah was closest to some species of Channichthyidae. The study would provide a basic data for further research on population structure, conservation genetics and molecular evolution of N. ionah.
format Online
Article
Text
id pubmed-7801004
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78010042021-01-21 The complete mitochondrial genome of Neopagetopsis ionah (Channichthyidae, neopagetopsis) with phylogenetic consideration Sang, Chengde Liang, Shuzhang Song, Wei Huang, Hongliang Jiang, Keji Chen, Xuezhong Mitochondrial DNA B Resour Mitogenome Announcement In this study, the complete mitochondrial genome of Neopagetopsis ionah was obtained, which was 17,634 bp including two ribosomal RNAs, 13 protein-coding genes, 22 transfer RNAs, and a non-coding control region. In 13 protein-coding genes, there types of initiation codon (ATC, ATG, and GTG) and four types of stop codons (TAA, TAG, TA, and T) were identified. Among the 22 transfer RNAs, eight tRNAs were encoded by L-strand. The length of D-loop was 1519 bp and its contents of A, T, C, and G were 26.9%, 27.6%, 17.5%, and 30%, respectively. The complete mtDNA sequences of N. ionah and other 13 species were used to reconstruct the phylogenetic tree suggested that N. ionah was closest to some species of Channichthyidae. The study would provide a basic data for further research on population structure, conservation genetics and molecular evolution of N. ionah. Taylor & Francis 2018-10-26 /pmc/articles/PMC7801004/ /pubmed/33490576 http://dx.doi.org/10.1080/23802359.2018.1532350 Text en © 2018 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/
spellingShingle Mitogenome Announcement
Sang, Chengde
Liang, Shuzhang
Song, Wei
Huang, Hongliang
Jiang, Keji
Chen, Xuezhong
The complete mitochondrial genome of Neopagetopsis ionah (Channichthyidae, neopagetopsis) with phylogenetic consideration
title The complete mitochondrial genome of Neopagetopsis ionah (Channichthyidae, neopagetopsis) with phylogenetic consideration
title_full The complete mitochondrial genome of Neopagetopsis ionah (Channichthyidae, neopagetopsis) with phylogenetic consideration
title_fullStr The complete mitochondrial genome of Neopagetopsis ionah (Channichthyidae, neopagetopsis) with phylogenetic consideration
title_full_unstemmed The complete mitochondrial genome of Neopagetopsis ionah (Channichthyidae, neopagetopsis) with phylogenetic consideration
title_short The complete mitochondrial genome of Neopagetopsis ionah (Channichthyidae, neopagetopsis) with phylogenetic consideration
title_sort complete mitochondrial genome of neopagetopsis ionah (channichthyidae, neopagetopsis) with phylogenetic consideration
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801004/
https://www.ncbi.nlm.nih.gov/pubmed/33490576
http://dx.doi.org/10.1080/23802359.2018.1532350
work_keys_str_mv AT sangchengde thecompletemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT liangshuzhang thecompletemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT songwei thecompletemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT huanghongliang thecompletemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT jiangkeji thecompletemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT chenxuezhong thecompletemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT sangchengde completemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT liangshuzhang completemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT songwei completemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT huanghongliang completemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT jiangkeji completemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration
AT chenxuezhong completemitochondrialgenomeofneopagetopsisionahchannichthyidaeneopagetopsiswithphylogeneticconsideration