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The complete plastid genome sequence of Rheum wittrockii (Polygonaceae), endangered species of Kazakhstan
The complete chloroplast (cp) genome sequence of Rheum wittrockii, an endangered and medicinal plant of Kazakhstan, was firstly determined in the present study. It was 159,051 bp and contained a large single copy region (84,750 bp) and a small single copy region (12,999 bp) which were separated by t...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801014/ https://www.ncbi.nlm.nih.gov/pubmed/33490462 http://dx.doi.org/10.1080/23802359.2017.1361359 |
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author | Dagarova, Shynar S. Sitpayeva, Gulnara T. Pak, Jae-Hong Kim, Jung Sung |
author_facet | Dagarova, Shynar S. Sitpayeva, Gulnara T. Pak, Jae-Hong Kim, Jung Sung |
author_sort | Dagarova, Shynar S. |
collection | PubMed |
description | The complete chloroplast (cp) genome sequence of Rheum wittrockii, an endangered and medicinal plant of Kazakhstan, was firstly determined in the present study. It was 159,051 bp and contained a large single copy region (84,750 bp) and a small single copy region (12,999 bp) which were separated by two inverted repeat regions (30,651 bp). In total, 131 genes were identified and they were consisted of 79 coding genes, 8 rRNA genes, and 36 tRNA genes. rpl23 was pseudogenes due to sequence substitution. Among 23 genes containing introns, rps12 and ycf3 contained two introns and the rest had just one intron. Comparing to Chinese R. palmatum chloroplast genome, rpl32 and rpoA gene were shortened due to 1bp and 7bp deletion at poly-T and poly-A, respectively. |
format | Online Article Text |
id | pubmed-7801014 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78010142021-01-21 The complete plastid genome sequence of Rheum wittrockii (Polygonaceae), endangered species of Kazakhstan Dagarova, Shynar S. Sitpayeva, Gulnara T. Pak, Jae-Hong Kim, Jung Sung Mitochondrial DNA B Resour Mitogenome Announcement The complete chloroplast (cp) genome sequence of Rheum wittrockii, an endangered and medicinal plant of Kazakhstan, was firstly determined in the present study. It was 159,051 bp and contained a large single copy region (84,750 bp) and a small single copy region (12,999 bp) which were separated by two inverted repeat regions (30,651 bp). In total, 131 genes were identified and they were consisted of 79 coding genes, 8 rRNA genes, and 36 tRNA genes. rpl23 was pseudogenes due to sequence substitution. Among 23 genes containing introns, rps12 and ycf3 contained two introns and the rest had just one intron. Comparing to Chinese R. palmatum chloroplast genome, rpl32 and rpoA gene were shortened due to 1bp and 7bp deletion at poly-T and poly-A, respectively. Taylor & Francis 2017-08-08 /pmc/articles/PMC7801014/ /pubmed/33490462 http://dx.doi.org/10.1080/23802359.2017.1361359 Text en © 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Mitogenome Announcement Dagarova, Shynar S. Sitpayeva, Gulnara T. Pak, Jae-Hong Kim, Jung Sung The complete plastid genome sequence of Rheum wittrockii (Polygonaceae), endangered species of Kazakhstan |
title | The complete plastid genome sequence of Rheum wittrockii (Polygonaceae), endangered species of Kazakhstan |
title_full | The complete plastid genome sequence of Rheum wittrockii (Polygonaceae), endangered species of Kazakhstan |
title_fullStr | The complete plastid genome sequence of Rheum wittrockii (Polygonaceae), endangered species of Kazakhstan |
title_full_unstemmed | The complete plastid genome sequence of Rheum wittrockii (Polygonaceae), endangered species of Kazakhstan |
title_short | The complete plastid genome sequence of Rheum wittrockii (Polygonaceae), endangered species of Kazakhstan |
title_sort | complete plastid genome sequence of rheum wittrockii (polygonaceae), endangered species of kazakhstan |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801014/ https://www.ncbi.nlm.nih.gov/pubmed/33490462 http://dx.doi.org/10.1080/23802359.2017.1361359 |
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