Cargando…

Chloroplast genome structure and phylogenetic position of Lophatherum gracile

Lophatherum gracile is distributed in south China, Japan and South Asia, and it is wild in the valley, stream, woodland, forest edge and gully edge. In this study, the complete chloroplast genome sequence of Lophatherum gracile was successfully obtained using Illumina sequencing. The full length of...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhou, Caibi, Zhou, Xiaolu, Dai, Tingrui, Wen, Zhirui, Guo, Xiying, Song, Yuyan, Long, Lu, Li, Yaling, Mei, Xin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801094/
https://www.ncbi.nlm.nih.gov/pubmed/33490590
http://dx.doi.org/10.1080/23802359.2020.1845577
_version_ 1783635499553914880
author Zhou, Caibi
Zhou, Xiaolu
Dai, Tingrui
Wen, Zhirui
Guo, Xiying
Song, Yuyan
Long, Lu
Li, Yaling
Mei, Xin
author_facet Zhou, Caibi
Zhou, Xiaolu
Dai, Tingrui
Wen, Zhirui
Guo, Xiying
Song, Yuyan
Long, Lu
Li, Yaling
Mei, Xin
author_sort Zhou, Caibi
collection PubMed
description Lophatherum gracile is distributed in south China, Japan and South Asia, and it is wild in the valley, stream, woodland, forest edge and gully edge. In this study, the complete chloroplast genome sequence of Lophatherum gracile was successfully obtained using Illumina sequencing. The full length of the chloroplast genome length was 137,749 bp with a typical quadripartite structure: one large single copy (LSC) region (80,610 bp), one small single copy (SSC) region (12,429 bp), and a pair of inverted repeats (IRs) (22,355 bp each). The GC content of this genome was 38.64%. The whole genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that Lophatherum gracile was closely related to Cenchrus americanus and Cenchrus longispinus.
format Online
Article
Text
id pubmed-7801094
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-78010942021-01-21 Chloroplast genome structure and phylogenetic position of Lophatherum gracile Zhou, Caibi Zhou, Xiaolu Dai, Tingrui Wen, Zhirui Guo, Xiying Song, Yuyan Long, Lu Li, Yaling Mei, Xin Mitochondrial DNA B Resour Mitogenome Announcement Lophatherum gracile is distributed in south China, Japan and South Asia, and it is wild in the valley, stream, woodland, forest edge and gully edge. In this study, the complete chloroplast genome sequence of Lophatherum gracile was successfully obtained using Illumina sequencing. The full length of the chloroplast genome length was 137,749 bp with a typical quadripartite structure: one large single copy (LSC) region (80,610 bp), one small single copy (SSC) region (12,429 bp), and a pair of inverted repeats (IRs) (22,355 bp each). The GC content of this genome was 38.64%. The whole genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that Lophatherum gracile was closely related to Cenchrus americanus and Cenchrus longispinus. Taylor & Francis 2021-01-06 /pmc/articles/PMC7801094/ /pubmed/33490590 http://dx.doi.org/10.1080/23802359.2020.1845577 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zhou, Caibi
Zhou, Xiaolu
Dai, Tingrui
Wen, Zhirui
Guo, Xiying
Song, Yuyan
Long, Lu
Li, Yaling
Mei, Xin
Chloroplast genome structure and phylogenetic position of Lophatherum gracile
title Chloroplast genome structure and phylogenetic position of Lophatherum gracile
title_full Chloroplast genome structure and phylogenetic position of Lophatherum gracile
title_fullStr Chloroplast genome structure and phylogenetic position of Lophatherum gracile
title_full_unstemmed Chloroplast genome structure and phylogenetic position of Lophatherum gracile
title_short Chloroplast genome structure and phylogenetic position of Lophatherum gracile
title_sort chloroplast genome structure and phylogenetic position of lophatherum gracile
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801094/
https://www.ncbi.nlm.nih.gov/pubmed/33490590
http://dx.doi.org/10.1080/23802359.2020.1845577
work_keys_str_mv AT zhoucaibi chloroplastgenomestructureandphylogeneticpositionoflophatherumgracile
AT zhouxiaolu chloroplastgenomestructureandphylogeneticpositionoflophatherumgracile
AT daitingrui chloroplastgenomestructureandphylogeneticpositionoflophatherumgracile
AT wenzhirui chloroplastgenomestructureandphylogeneticpositionoflophatherumgracile
AT guoxiying chloroplastgenomestructureandphylogeneticpositionoflophatherumgracile
AT songyuyan chloroplastgenomestructureandphylogeneticpositionoflophatherumgracile
AT longlu chloroplastgenomestructureandphylogeneticpositionoflophatherumgracile
AT liyaling chloroplastgenomestructureandphylogeneticpositionoflophatherumgracile
AT meixin chloroplastgenomestructureandphylogeneticpositionoflophatherumgracile