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Chloroplast genome structure and phylogenetic position of Lophatherum gracile
Lophatherum gracile is distributed in south China, Japan and South Asia, and it is wild in the valley, stream, woodland, forest edge and gully edge. In this study, the complete chloroplast genome sequence of Lophatherum gracile was successfully obtained using Illumina sequencing. The full length of...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801094/ https://www.ncbi.nlm.nih.gov/pubmed/33490590 http://dx.doi.org/10.1080/23802359.2020.1845577 |
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author | Zhou, Caibi Zhou, Xiaolu Dai, Tingrui Wen, Zhirui Guo, Xiying Song, Yuyan Long, Lu Li, Yaling Mei, Xin |
author_facet | Zhou, Caibi Zhou, Xiaolu Dai, Tingrui Wen, Zhirui Guo, Xiying Song, Yuyan Long, Lu Li, Yaling Mei, Xin |
author_sort | Zhou, Caibi |
collection | PubMed |
description | Lophatherum gracile is distributed in south China, Japan and South Asia, and it is wild in the valley, stream, woodland, forest edge and gully edge. In this study, the complete chloroplast genome sequence of Lophatherum gracile was successfully obtained using Illumina sequencing. The full length of the chloroplast genome length was 137,749 bp with a typical quadripartite structure: one large single copy (LSC) region (80,610 bp), one small single copy (SSC) region (12,429 bp), and a pair of inverted repeats (IRs) (22,355 bp each). The GC content of this genome was 38.64%. The whole genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that Lophatherum gracile was closely related to Cenchrus americanus and Cenchrus longispinus. |
format | Online Article Text |
id | pubmed-7801094 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-78010942021-01-21 Chloroplast genome structure and phylogenetic position of Lophatherum gracile Zhou, Caibi Zhou, Xiaolu Dai, Tingrui Wen, Zhirui Guo, Xiying Song, Yuyan Long, Lu Li, Yaling Mei, Xin Mitochondrial DNA B Resour Mitogenome Announcement Lophatherum gracile is distributed in south China, Japan and South Asia, and it is wild in the valley, stream, woodland, forest edge and gully edge. In this study, the complete chloroplast genome sequence of Lophatherum gracile was successfully obtained using Illumina sequencing. The full length of the chloroplast genome length was 137,749 bp with a typical quadripartite structure: one large single copy (LSC) region (80,610 bp), one small single copy (SSC) region (12,429 bp), and a pair of inverted repeats (IRs) (22,355 bp each). The GC content of this genome was 38.64%. The whole genome contained 130 genes, including 85 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that Lophatherum gracile was closely related to Cenchrus americanus and Cenchrus longispinus. Taylor & Francis 2021-01-06 /pmc/articles/PMC7801094/ /pubmed/33490590 http://dx.doi.org/10.1080/23802359.2020.1845577 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhou, Caibi Zhou, Xiaolu Dai, Tingrui Wen, Zhirui Guo, Xiying Song, Yuyan Long, Lu Li, Yaling Mei, Xin Chloroplast genome structure and phylogenetic position of Lophatherum gracile |
title | Chloroplast genome structure and phylogenetic position of Lophatherum gracile |
title_full | Chloroplast genome structure and phylogenetic position of Lophatherum gracile |
title_fullStr | Chloroplast genome structure and phylogenetic position of Lophatherum gracile |
title_full_unstemmed | Chloroplast genome structure and phylogenetic position of Lophatherum gracile |
title_short | Chloroplast genome structure and phylogenetic position of Lophatherum gracile |
title_sort | chloroplast genome structure and phylogenetic position of lophatherum gracile |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801094/ https://www.ncbi.nlm.nih.gov/pubmed/33490590 http://dx.doi.org/10.1080/23802359.2020.1845577 |
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