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Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails

We sought to investigate whether epidemiological parameters that define epidemic models could be determined from the epidemic trajectory of infections, recovery, and hospitalizations prior to peak, and also to evaluate the comparability of data between jurisdictions reporting their statistics. We fo...

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Detalles Bibliográficos
Autores principales: Platt, Daniel E., Parida, Laxmi, Zalloua, Pierre
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801491/
https://www.ncbi.nlm.nih.gov/pubmed/33432032
http://dx.doi.org/10.1038/s41598-020-79745-6
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author Platt, Daniel E.
Parida, Laxmi
Zalloua, Pierre
author_facet Platt, Daniel E.
Parida, Laxmi
Zalloua, Pierre
author_sort Platt, Daniel E.
collection PubMed
description We sought to investigate whether epidemiological parameters that define epidemic models could be determined from the epidemic trajectory of infections, recovery, and hospitalizations prior to peak, and also to evaluate the comparability of data between jurisdictions reporting their statistics. We found that, analytically, the pre-peak growth of an epidemic underdetermines the model variates, and that the rate limiting variables are dominated by the exponentially expanding eigenmode of their equations. The variates quickly converge to the ratio of eigenvector components of the positive growth mode, which determines the doubling time. Without a sound epidemiological study framework, measurements of infection rates and other parameters are highly corrupted by uneven testing rates, uneven counting, and under reporting of relevant values. We argue that structured experiments must be performed to estimate these parameters in order to perform genetic association studies, or to construct viable models accurately predicting critical quantities such as hospitalization loads.
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spelling pubmed-78014912021-01-12 Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails Platt, Daniel E. Parida, Laxmi Zalloua, Pierre Sci Rep Article We sought to investigate whether epidemiological parameters that define epidemic models could be determined from the epidemic trajectory of infections, recovery, and hospitalizations prior to peak, and also to evaluate the comparability of data between jurisdictions reporting their statistics. We found that, analytically, the pre-peak growth of an epidemic underdetermines the model variates, and that the rate limiting variables are dominated by the exponentially expanding eigenmode of their equations. The variates quickly converge to the ratio of eigenvector components of the positive growth mode, which determines the doubling time. Without a sound epidemiological study framework, measurements of infection rates and other parameters are highly corrupted by uneven testing rates, uneven counting, and under reporting of relevant values. We argue that structured experiments must be performed to estimate these parameters in order to perform genetic association studies, or to construct viable models accurately predicting critical quantities such as hospitalization loads. Nature Publishing Group UK 2021-01-11 /pmc/articles/PMC7801491/ /pubmed/33432032 http://dx.doi.org/10.1038/s41598-020-79745-6 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Platt, Daniel E.
Parida, Laxmi
Zalloua, Pierre
Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails
title Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails
title_full Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails
title_fullStr Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails
title_full_unstemmed Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails
title_short Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails
title_sort lies, gosh darn lies, and not enough good statistics: why epidemic model parameter estimation fails
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801491/
https://www.ncbi.nlm.nih.gov/pubmed/33432032
http://dx.doi.org/10.1038/s41598-020-79745-6
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