Cargando…
Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails
We sought to investigate whether epidemiological parameters that define epidemic models could be determined from the epidemic trajectory of infections, recovery, and hospitalizations prior to peak, and also to evaluate the comparability of data between jurisdictions reporting their statistics. We fo...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801491/ https://www.ncbi.nlm.nih.gov/pubmed/33432032 http://dx.doi.org/10.1038/s41598-020-79745-6 |
_version_ | 1783635587445555200 |
---|---|
author | Platt, Daniel E. Parida, Laxmi Zalloua, Pierre |
author_facet | Platt, Daniel E. Parida, Laxmi Zalloua, Pierre |
author_sort | Platt, Daniel E. |
collection | PubMed |
description | We sought to investigate whether epidemiological parameters that define epidemic models could be determined from the epidemic trajectory of infections, recovery, and hospitalizations prior to peak, and also to evaluate the comparability of data between jurisdictions reporting their statistics. We found that, analytically, the pre-peak growth of an epidemic underdetermines the model variates, and that the rate limiting variables are dominated by the exponentially expanding eigenmode of their equations. The variates quickly converge to the ratio of eigenvector components of the positive growth mode, which determines the doubling time. Without a sound epidemiological study framework, measurements of infection rates and other parameters are highly corrupted by uneven testing rates, uneven counting, and under reporting of relevant values. We argue that structured experiments must be performed to estimate these parameters in order to perform genetic association studies, or to construct viable models accurately predicting critical quantities such as hospitalization loads. |
format | Online Article Text |
id | pubmed-7801491 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78014912021-01-12 Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails Platt, Daniel E. Parida, Laxmi Zalloua, Pierre Sci Rep Article We sought to investigate whether epidemiological parameters that define epidemic models could be determined from the epidemic trajectory of infections, recovery, and hospitalizations prior to peak, and also to evaluate the comparability of data between jurisdictions reporting their statistics. We found that, analytically, the pre-peak growth of an epidemic underdetermines the model variates, and that the rate limiting variables are dominated by the exponentially expanding eigenmode of their equations. The variates quickly converge to the ratio of eigenvector components of the positive growth mode, which determines the doubling time. Without a sound epidemiological study framework, measurements of infection rates and other parameters are highly corrupted by uneven testing rates, uneven counting, and under reporting of relevant values. We argue that structured experiments must be performed to estimate these parameters in order to perform genetic association studies, or to construct viable models accurately predicting critical quantities such as hospitalization loads. Nature Publishing Group UK 2021-01-11 /pmc/articles/PMC7801491/ /pubmed/33432032 http://dx.doi.org/10.1038/s41598-020-79745-6 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Platt, Daniel E. Parida, Laxmi Zalloua, Pierre Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails |
title | Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails |
title_full | Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails |
title_fullStr | Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails |
title_full_unstemmed | Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails |
title_short | Lies, Gosh Darn Lies, and not enough good statistics: why epidemic model parameter estimation fails |
title_sort | lies, gosh darn lies, and not enough good statistics: why epidemic model parameter estimation fails |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801491/ https://www.ncbi.nlm.nih.gov/pubmed/33432032 http://dx.doi.org/10.1038/s41598-020-79745-6 |
work_keys_str_mv | AT plattdaniele liesgoshdarnliesandnotenoughgoodstatisticswhyepidemicmodelparameterestimationfails AT paridalaxmi liesgoshdarnliesandnotenoughgoodstatisticswhyepidemicmodelparameterestimationfails AT zallouapierre liesgoshdarnliesandnotenoughgoodstatisticswhyepidemicmodelparameterestimationfails |