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Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data
BACKGROUND: Chronic obstructive pulmonary disease (COPD), the third leading cause of death worldwide, is often underdiagnosed. PURPOSE: To develop machine learning methods to predict COPD using chest radiographs and a convolutional neural network (CNN) trained with near-concurrent pulmonary function...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Dove
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801924/ https://www.ncbi.nlm.nih.gov/pubmed/33447023 http://dx.doi.org/10.2147/COPD.S279850 |
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author | Schroeder, Joyce D Bigolin Lanfredi, Ricardo Li, Tao Chan, Jessica Vachet, Clement Paine III, Robert Srikumar, Vivek Tasdizen, Tolga |
author_facet | Schroeder, Joyce D Bigolin Lanfredi, Ricardo Li, Tao Chan, Jessica Vachet, Clement Paine III, Robert Srikumar, Vivek Tasdizen, Tolga |
author_sort | Schroeder, Joyce D |
collection | PubMed |
description | BACKGROUND: Chronic obstructive pulmonary disease (COPD), the third leading cause of death worldwide, is often underdiagnosed. PURPOSE: To develop machine learning methods to predict COPD using chest radiographs and a convolutional neural network (CNN) trained with near-concurrent pulmonary function test (PFT) data. Comparison is made to natural language processing (NLP) of the associated radiologist text reports. MATERIALS AND METHODS: This IRB-approved single-institution retrospective study uses 6749 two-view chest radiograph exams (2012–2017, 4436 unique subjects, 54% female, 46% male), same-day associated radiologist text reports, and PFT exams acquired within 180 days. The Image Model (Resnet18 pre-trained with ImageNet CNN) is trained using frontal and lateral radiographs and PFTs with 10% of the subjects for validation and 19% for testing. The NLP Model is trained using radiologist text reports and PFTs. The primary metric of model comparison is the area under the receiver operating characteristic curve (AUC). RESULTS: The Image Model achieves an AUC of 0.814 for prediction of obstructive lung disease (FEV1/FVC <0.7) from chest radiographs and performs better than the NLP Model (AUC 0.704, p<0.001) from radiologist text reports where FEV1 = forced expiratory volume in 1 second and FVC = forced vital capacity. The Image Model performs better for prediction of severe or very severe COPD (FEV1 <0.5) with an AUC of 0.837 versus the NLP model AUC of 0.770 (p<0.001). CONCLUSION: A CNN Image Model trained on physiologic lung function data (PFTs) can be applied to chest radiographs for quantitative prediction of obstructive lung disease with good accuracy. |
format | Online Article Text |
id | pubmed-7801924 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Dove |
record_format | MEDLINE/PubMed |
spelling | pubmed-78019242021-01-13 Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data Schroeder, Joyce D Bigolin Lanfredi, Ricardo Li, Tao Chan, Jessica Vachet, Clement Paine III, Robert Srikumar, Vivek Tasdizen, Tolga Int J Chron Obstruct Pulmon Dis Original Research BACKGROUND: Chronic obstructive pulmonary disease (COPD), the third leading cause of death worldwide, is often underdiagnosed. PURPOSE: To develop machine learning methods to predict COPD using chest radiographs and a convolutional neural network (CNN) trained with near-concurrent pulmonary function test (PFT) data. Comparison is made to natural language processing (NLP) of the associated radiologist text reports. MATERIALS AND METHODS: This IRB-approved single-institution retrospective study uses 6749 two-view chest radiograph exams (2012–2017, 4436 unique subjects, 54% female, 46% male), same-day associated radiologist text reports, and PFT exams acquired within 180 days. The Image Model (Resnet18 pre-trained with ImageNet CNN) is trained using frontal and lateral radiographs and PFTs with 10% of the subjects for validation and 19% for testing. The NLP Model is trained using radiologist text reports and PFTs. The primary metric of model comparison is the area under the receiver operating characteristic curve (AUC). RESULTS: The Image Model achieves an AUC of 0.814 for prediction of obstructive lung disease (FEV1/FVC <0.7) from chest radiographs and performs better than the NLP Model (AUC 0.704, p<0.001) from radiologist text reports where FEV1 = forced expiratory volume in 1 second and FVC = forced vital capacity. The Image Model performs better for prediction of severe or very severe COPD (FEV1 <0.5) with an AUC of 0.837 versus the NLP model AUC of 0.770 (p<0.001). CONCLUSION: A CNN Image Model trained on physiologic lung function data (PFTs) can be applied to chest radiographs for quantitative prediction of obstructive lung disease with good accuracy. Dove 2021-01-05 /pmc/articles/PMC7801924/ /pubmed/33447023 http://dx.doi.org/10.2147/COPD.S279850 Text en © 2020 Schroeder et al. http://creativecommons.org/licenses/by-nc/3.0/ This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php). |
spellingShingle | Original Research Schroeder, Joyce D Bigolin Lanfredi, Ricardo Li, Tao Chan, Jessica Vachet, Clement Paine III, Robert Srikumar, Vivek Tasdizen, Tolga Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data |
title | Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data |
title_full | Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data |
title_fullStr | Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data |
title_full_unstemmed | Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data |
title_short | Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data |
title_sort | prediction of obstructive lung disease from chest radiographs via deep learning trained on pulmonary function data |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801924/ https://www.ncbi.nlm.nih.gov/pubmed/33447023 http://dx.doi.org/10.2147/COPD.S279850 |
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