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Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data

BACKGROUND: Chronic obstructive pulmonary disease (COPD), the third leading cause of death worldwide, is often underdiagnosed. PURPOSE: To develop machine learning methods to predict COPD using chest radiographs and a convolutional neural network (CNN) trained with near-concurrent pulmonary function...

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Autores principales: Schroeder, Joyce D, Bigolin Lanfredi, Ricardo, Li, Tao, Chan, Jessica, Vachet, Clement, Paine III, Robert, Srikumar, Vivek, Tasdizen, Tolga
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801924/
https://www.ncbi.nlm.nih.gov/pubmed/33447023
http://dx.doi.org/10.2147/COPD.S279850
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author Schroeder, Joyce D
Bigolin Lanfredi, Ricardo
Li, Tao
Chan, Jessica
Vachet, Clement
Paine III, Robert
Srikumar, Vivek
Tasdizen, Tolga
author_facet Schroeder, Joyce D
Bigolin Lanfredi, Ricardo
Li, Tao
Chan, Jessica
Vachet, Clement
Paine III, Robert
Srikumar, Vivek
Tasdizen, Tolga
author_sort Schroeder, Joyce D
collection PubMed
description BACKGROUND: Chronic obstructive pulmonary disease (COPD), the third leading cause of death worldwide, is often underdiagnosed. PURPOSE: To develop machine learning methods to predict COPD using chest radiographs and a convolutional neural network (CNN) trained with near-concurrent pulmonary function test (PFT) data. Comparison is made to natural language processing (NLP) of the associated radiologist text reports. MATERIALS AND METHODS: This IRB-approved single-institution retrospective study uses 6749 two-view chest radiograph exams (2012–2017, 4436 unique subjects, 54% female, 46% male), same-day associated radiologist text reports, and PFT exams acquired within 180 days. The Image Model (Resnet18 pre-trained with ImageNet CNN) is trained using frontal and lateral radiographs and PFTs with 10% of the subjects for validation and 19% for testing. The NLP Model is trained using radiologist text reports and PFTs. The primary metric of model comparison is the area under the receiver operating characteristic curve (AUC). RESULTS: The Image Model achieves an AUC of 0.814 for prediction of obstructive lung disease (FEV1/FVC <0.7) from chest radiographs and performs better than the NLP Model (AUC 0.704, p<0.001) from radiologist text reports where FEV1 = forced expiratory volume in 1 second and FVC = forced vital capacity. The Image Model performs better for prediction of severe or very severe COPD (FEV1 <0.5) with an AUC of 0.837 versus the NLP model AUC of 0.770 (p<0.001). CONCLUSION: A CNN Image Model trained on physiologic lung function data (PFTs) can be applied to chest radiographs for quantitative prediction of obstructive lung disease with good accuracy.
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spelling pubmed-78019242021-01-13 Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data Schroeder, Joyce D Bigolin Lanfredi, Ricardo Li, Tao Chan, Jessica Vachet, Clement Paine III, Robert Srikumar, Vivek Tasdizen, Tolga Int J Chron Obstruct Pulmon Dis Original Research BACKGROUND: Chronic obstructive pulmonary disease (COPD), the third leading cause of death worldwide, is often underdiagnosed. PURPOSE: To develop machine learning methods to predict COPD using chest radiographs and a convolutional neural network (CNN) trained with near-concurrent pulmonary function test (PFT) data. Comparison is made to natural language processing (NLP) of the associated radiologist text reports. MATERIALS AND METHODS: This IRB-approved single-institution retrospective study uses 6749 two-view chest radiograph exams (2012–2017, 4436 unique subjects, 54% female, 46% male), same-day associated radiologist text reports, and PFT exams acquired within 180 days. The Image Model (Resnet18 pre-trained with ImageNet CNN) is trained using frontal and lateral radiographs and PFTs with 10% of the subjects for validation and 19% for testing. The NLP Model is trained using radiologist text reports and PFTs. The primary metric of model comparison is the area under the receiver operating characteristic curve (AUC). RESULTS: The Image Model achieves an AUC of 0.814 for prediction of obstructive lung disease (FEV1/FVC <0.7) from chest radiographs and performs better than the NLP Model (AUC 0.704, p<0.001) from radiologist text reports where FEV1 = forced expiratory volume in 1 second and FVC = forced vital capacity. The Image Model performs better for prediction of severe or very severe COPD (FEV1 <0.5) with an AUC of 0.837 versus the NLP model AUC of 0.770 (p<0.001). CONCLUSION: A CNN Image Model trained on physiologic lung function data (PFTs) can be applied to chest radiographs for quantitative prediction of obstructive lung disease with good accuracy. Dove 2021-01-05 /pmc/articles/PMC7801924/ /pubmed/33447023 http://dx.doi.org/10.2147/COPD.S279850 Text en © 2020 Schroeder et al. http://creativecommons.org/licenses/by-nc/3.0/ This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Schroeder, Joyce D
Bigolin Lanfredi, Ricardo
Li, Tao
Chan, Jessica
Vachet, Clement
Paine III, Robert
Srikumar, Vivek
Tasdizen, Tolga
Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data
title Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data
title_full Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data
title_fullStr Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data
title_full_unstemmed Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data
title_short Prediction of Obstructive Lung Disease from Chest Radiographs via Deep Learning Trained on Pulmonary Function Data
title_sort prediction of obstructive lung disease from chest radiographs via deep learning trained on pulmonary function data
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7801924/
https://www.ncbi.nlm.nih.gov/pubmed/33447023
http://dx.doi.org/10.2147/COPD.S279850
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