Cargando…

Automatic segmentation of ventricular volume by 3D ultrasonography in post haemorrhagic ventricular dilatation among preterm infants

To train, evaluate, and validate the application of a deep learning framework in three-dimensional ultrasound (3D US) for the automatic segmentation of ventricular volume in preterm infants with post haemorrhagic ventricular dilatation (PHVD). We trained a 2D convolutional neural network (CNN) for a...

Descripción completa

Detalles Bibliográficos
Autores principales: Gontard, Lionel C., Pizarro, Joaquín, Sanz-Peña, Borja, Lubián López, Simón P., Benavente-Fernández, Isabel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7803781/
https://www.ncbi.nlm.nih.gov/pubmed/33436974
http://dx.doi.org/10.1038/s41598-020-80783-3
_version_ 1783636018206867456
author Gontard, Lionel C.
Pizarro, Joaquín
Sanz-Peña, Borja
Lubián López, Simón P.
Benavente-Fernández, Isabel
author_facet Gontard, Lionel C.
Pizarro, Joaquín
Sanz-Peña, Borja
Lubián López, Simón P.
Benavente-Fernández, Isabel
author_sort Gontard, Lionel C.
collection PubMed
description To train, evaluate, and validate the application of a deep learning framework in three-dimensional ultrasound (3D US) for the automatic segmentation of ventricular volume in preterm infants with post haemorrhagic ventricular dilatation (PHVD). We trained a 2D convolutional neural network (CNN) for automatic segmentation ventricular volume from 3D US of preterm infants with PHVD. The method was validated with the Dice similarity coefficient (DSC) and the intra-class coefficient (ICC) compared to manual segmentation. The mean birth weight of the included patients was 1233.1 g (SD 309.4) and mean gestational age was 28.1 weeks (SD 1.6). A total of 152 serial 3D US from 10 preterm infants with PHVD were analysed. 230 ventricles were manually segmented. Of these, 108 were used for training a 2D CNN and 122 for validating the methodology for automatic segmentation. The global agreement for manual versus automated measures in the validation data (n = 122) was excellent with an ICC of 0.944 (0.874–0.971). The Dice similarity coefficient was 0.8 (± 0.01). 3D US based ventricular volume estimation through an automatic segmentation software developed through deep learning improves the accuracy and reduces the processing time needed for manual segmentation using VOCAL. 3D US should be considered a promising tool to help deepen our current understanding of the complex evolution of PHVD.
format Online
Article
Text
id pubmed-7803781
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-78037812021-01-13 Automatic segmentation of ventricular volume by 3D ultrasonography in post haemorrhagic ventricular dilatation among preterm infants Gontard, Lionel C. Pizarro, Joaquín Sanz-Peña, Borja Lubián López, Simón P. Benavente-Fernández, Isabel Sci Rep Article To train, evaluate, and validate the application of a deep learning framework in three-dimensional ultrasound (3D US) for the automatic segmentation of ventricular volume in preterm infants with post haemorrhagic ventricular dilatation (PHVD). We trained a 2D convolutional neural network (CNN) for automatic segmentation ventricular volume from 3D US of preterm infants with PHVD. The method was validated with the Dice similarity coefficient (DSC) and the intra-class coefficient (ICC) compared to manual segmentation. The mean birth weight of the included patients was 1233.1 g (SD 309.4) and mean gestational age was 28.1 weeks (SD 1.6). A total of 152 serial 3D US from 10 preterm infants with PHVD were analysed. 230 ventricles were manually segmented. Of these, 108 were used for training a 2D CNN and 122 for validating the methodology for automatic segmentation. The global agreement for manual versus automated measures in the validation data (n = 122) was excellent with an ICC of 0.944 (0.874–0.971). The Dice similarity coefficient was 0.8 (± 0.01). 3D US based ventricular volume estimation through an automatic segmentation software developed through deep learning improves the accuracy and reduces the processing time needed for manual segmentation using VOCAL. 3D US should be considered a promising tool to help deepen our current understanding of the complex evolution of PHVD. Nature Publishing Group UK 2021-01-12 /pmc/articles/PMC7803781/ /pubmed/33436974 http://dx.doi.org/10.1038/s41598-020-80783-3 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Gontard, Lionel C.
Pizarro, Joaquín
Sanz-Peña, Borja
Lubián López, Simón P.
Benavente-Fernández, Isabel
Automatic segmentation of ventricular volume by 3D ultrasonography in post haemorrhagic ventricular dilatation among preterm infants
title Automatic segmentation of ventricular volume by 3D ultrasonography in post haemorrhagic ventricular dilatation among preterm infants
title_full Automatic segmentation of ventricular volume by 3D ultrasonography in post haemorrhagic ventricular dilatation among preterm infants
title_fullStr Automatic segmentation of ventricular volume by 3D ultrasonography in post haemorrhagic ventricular dilatation among preterm infants
title_full_unstemmed Automatic segmentation of ventricular volume by 3D ultrasonography in post haemorrhagic ventricular dilatation among preterm infants
title_short Automatic segmentation of ventricular volume by 3D ultrasonography in post haemorrhagic ventricular dilatation among preterm infants
title_sort automatic segmentation of ventricular volume by 3d ultrasonography in post haemorrhagic ventricular dilatation among preterm infants
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7803781/
https://www.ncbi.nlm.nih.gov/pubmed/33436974
http://dx.doi.org/10.1038/s41598-020-80783-3
work_keys_str_mv AT gontardlionelc automaticsegmentationofventricularvolumeby3dultrasonographyinposthaemorrhagicventriculardilatationamongpreterminfants
AT pizarrojoaquin automaticsegmentationofventricularvolumeby3dultrasonographyinposthaemorrhagicventriculardilatationamongpreterminfants
AT sanzpenaborja automaticsegmentationofventricularvolumeby3dultrasonographyinposthaemorrhagicventriculardilatationamongpreterminfants
AT lubianlopezsimonp automaticsegmentationofventricularvolumeby3dultrasonographyinposthaemorrhagicventriculardilatationamongpreterminfants
AT benaventefernandezisabel automaticsegmentationofventricularvolumeby3dultrasonographyinposthaemorrhagicventriculardilatationamongpreterminfants