Cargando…

COVID-19 detection and heatmap generation in chest x-ray images

Purpose: The outbreak of COVID-19 or coronavirus was first reported in 2019. It has widely and rapidly spread around the world. The detection of COVID-19 cases is one of the important factors to stop the epidemic, because the infected individuals must be quarantined. One reliable way to detect COVID...

Descripción completa

Detalles Bibliográficos
Autores principales: Kusakunniran, Worapan, Karnjanapreechakorn, Sarattha, Siriapisith, Thanongchai, Borwarnginn, Punyanuch, Sutassananon, Krittanat, Tongdee, Trongtum, Saiviroonporn, Pairash
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society of Photo-Optical Instrumentation Engineers 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7804292/
https://www.ncbi.nlm.nih.gov/pubmed/33457446
http://dx.doi.org/10.1117/1.JMI.8.S1.014001
_version_ 1783636131341926400
author Kusakunniran, Worapan
Karnjanapreechakorn, Sarattha
Siriapisith, Thanongchai
Borwarnginn, Punyanuch
Sutassananon, Krittanat
Tongdee, Trongtum
Saiviroonporn, Pairash
author_facet Kusakunniran, Worapan
Karnjanapreechakorn, Sarattha
Siriapisith, Thanongchai
Borwarnginn, Punyanuch
Sutassananon, Krittanat
Tongdee, Trongtum
Saiviroonporn, Pairash
author_sort Kusakunniran, Worapan
collection PubMed
description Purpose: The outbreak of COVID-19 or coronavirus was first reported in 2019. It has widely and rapidly spread around the world. The detection of COVID-19 cases is one of the important factors to stop the epidemic, because the infected individuals must be quarantined. One reliable way to detect COVID-19 cases is using chest x-ray images, where signals of the infection are located in lung areas. We propose a solution to automatically classify COVID-19 cases in chest x-ray images. Approach: The ResNet-101 architecture is adopted as the main network with more than 44 millions parameters. The whole net is trained using the large size of [Formula: see text] x-ray images. The heatmap under the region of interest of segmented lung is constructed to visualize and emphasize signals of COVID-19 in each input x-ray image. Lungs are segmented using the pretrained U-Net. The confidence score of being COVID-19 is also calculated for each classification result. Results: The proposed solution is evaluated based on COVID-19 and normal cases. It is also tested on unseen classes to validate a regularization of the constructed model. They include other normal cases where chest x-ray images are normal without any disease but with some small remarks, and other abnormal cases where chest x-ray images are abnormal with some other diseases containing remarks similar to COVID-19. The proposed method can achieve the sensitivity, specificity, and accuracy of 97%, 98%, and 98%, respectively. Conclusions: It can be concluded that the proposed solution can detect COVID-19 in a chest x-ray image. The heatmap and confidence score of the detection are also demonstrated, such that users or human experts can use them for a final diagnosis in practical usages.
format Online
Article
Text
id pubmed-7804292
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Society of Photo-Optical Instrumentation Engineers
record_format MEDLINE/PubMed
spelling pubmed-78042922021-02-08 COVID-19 detection and heatmap generation in chest x-ray images Kusakunniran, Worapan Karnjanapreechakorn, Sarattha Siriapisith, Thanongchai Borwarnginn, Punyanuch Sutassananon, Krittanat Tongdee, Trongtum Saiviroonporn, Pairash J Med Imaging (Bellingham) Image Processing Purpose: The outbreak of COVID-19 or coronavirus was first reported in 2019. It has widely and rapidly spread around the world. The detection of COVID-19 cases is one of the important factors to stop the epidemic, because the infected individuals must be quarantined. One reliable way to detect COVID-19 cases is using chest x-ray images, where signals of the infection are located in lung areas. We propose a solution to automatically classify COVID-19 cases in chest x-ray images. Approach: The ResNet-101 architecture is adopted as the main network with more than 44 millions parameters. The whole net is trained using the large size of [Formula: see text] x-ray images. The heatmap under the region of interest of segmented lung is constructed to visualize and emphasize signals of COVID-19 in each input x-ray image. Lungs are segmented using the pretrained U-Net. The confidence score of being COVID-19 is also calculated for each classification result. Results: The proposed solution is evaluated based on COVID-19 and normal cases. It is also tested on unseen classes to validate a regularization of the constructed model. They include other normal cases where chest x-ray images are normal without any disease but with some small remarks, and other abnormal cases where chest x-ray images are abnormal with some other diseases containing remarks similar to COVID-19. The proposed method can achieve the sensitivity, specificity, and accuracy of 97%, 98%, and 98%, respectively. Conclusions: It can be concluded that the proposed solution can detect COVID-19 in a chest x-ray image. The heatmap and confidence score of the detection are also demonstrated, such that users or human experts can use them for a final diagnosis in practical usages. Society of Photo-Optical Instrumentation Engineers 2021-01-09 2021-01 /pmc/articles/PMC7804292/ /pubmed/33457446 http://dx.doi.org/10.1117/1.JMI.8.S1.014001 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.
spellingShingle Image Processing
Kusakunniran, Worapan
Karnjanapreechakorn, Sarattha
Siriapisith, Thanongchai
Borwarnginn, Punyanuch
Sutassananon, Krittanat
Tongdee, Trongtum
Saiviroonporn, Pairash
COVID-19 detection and heatmap generation in chest x-ray images
title COVID-19 detection and heatmap generation in chest x-ray images
title_full COVID-19 detection and heatmap generation in chest x-ray images
title_fullStr COVID-19 detection and heatmap generation in chest x-ray images
title_full_unstemmed COVID-19 detection and heatmap generation in chest x-ray images
title_short COVID-19 detection and heatmap generation in chest x-ray images
title_sort covid-19 detection and heatmap generation in chest x-ray images
topic Image Processing
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7804292/
https://www.ncbi.nlm.nih.gov/pubmed/33457446
http://dx.doi.org/10.1117/1.JMI.8.S1.014001
work_keys_str_mv AT kusakunniranworapan covid19detectionandheatmapgenerationinchestxrayimages
AT karnjanapreechakornsarattha covid19detectionandheatmapgenerationinchestxrayimages
AT siriapisiththanongchai covid19detectionandheatmapgenerationinchestxrayimages
AT borwarnginnpunyanuch covid19detectionandheatmapgenerationinchestxrayimages
AT sutassananonkrittanat covid19detectionandheatmapgenerationinchestxrayimages
AT tongdeetrongtum covid19detectionandheatmapgenerationinchestxrayimages
AT saiviroonpornpairash covid19detectionandheatmapgenerationinchestxrayimages