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COVID-19 detection and heatmap generation in chest x-ray images
Purpose: The outbreak of COVID-19 or coronavirus was first reported in 2019. It has widely and rapidly spread around the world. The detection of COVID-19 cases is one of the important factors to stop the epidemic, because the infected individuals must be quarantined. One reliable way to detect COVID...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Society of Photo-Optical Instrumentation Engineers
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7804292/ https://www.ncbi.nlm.nih.gov/pubmed/33457446 http://dx.doi.org/10.1117/1.JMI.8.S1.014001 |
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author | Kusakunniran, Worapan Karnjanapreechakorn, Sarattha Siriapisith, Thanongchai Borwarnginn, Punyanuch Sutassananon, Krittanat Tongdee, Trongtum Saiviroonporn, Pairash |
author_facet | Kusakunniran, Worapan Karnjanapreechakorn, Sarattha Siriapisith, Thanongchai Borwarnginn, Punyanuch Sutassananon, Krittanat Tongdee, Trongtum Saiviroonporn, Pairash |
author_sort | Kusakunniran, Worapan |
collection | PubMed |
description | Purpose: The outbreak of COVID-19 or coronavirus was first reported in 2019. It has widely and rapidly spread around the world. The detection of COVID-19 cases is one of the important factors to stop the epidemic, because the infected individuals must be quarantined. One reliable way to detect COVID-19 cases is using chest x-ray images, where signals of the infection are located in lung areas. We propose a solution to automatically classify COVID-19 cases in chest x-ray images. Approach: The ResNet-101 architecture is adopted as the main network with more than 44 millions parameters. The whole net is trained using the large size of [Formula: see text] x-ray images. The heatmap under the region of interest of segmented lung is constructed to visualize and emphasize signals of COVID-19 in each input x-ray image. Lungs are segmented using the pretrained U-Net. The confidence score of being COVID-19 is also calculated for each classification result. Results: The proposed solution is evaluated based on COVID-19 and normal cases. It is also tested on unseen classes to validate a regularization of the constructed model. They include other normal cases where chest x-ray images are normal without any disease but with some small remarks, and other abnormal cases where chest x-ray images are abnormal with some other diseases containing remarks similar to COVID-19. The proposed method can achieve the sensitivity, specificity, and accuracy of 97%, 98%, and 98%, respectively. Conclusions: It can be concluded that the proposed solution can detect COVID-19 in a chest x-ray image. The heatmap and confidence score of the detection are also demonstrated, such that users or human experts can use them for a final diagnosis in practical usages. |
format | Online Article Text |
id | pubmed-7804292 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Society of Photo-Optical Instrumentation Engineers |
record_format | MEDLINE/PubMed |
spelling | pubmed-78042922021-02-08 COVID-19 detection and heatmap generation in chest x-ray images Kusakunniran, Worapan Karnjanapreechakorn, Sarattha Siriapisith, Thanongchai Borwarnginn, Punyanuch Sutassananon, Krittanat Tongdee, Trongtum Saiviroonporn, Pairash J Med Imaging (Bellingham) Image Processing Purpose: The outbreak of COVID-19 or coronavirus was first reported in 2019. It has widely and rapidly spread around the world. The detection of COVID-19 cases is one of the important factors to stop the epidemic, because the infected individuals must be quarantined. One reliable way to detect COVID-19 cases is using chest x-ray images, where signals of the infection are located in lung areas. We propose a solution to automatically classify COVID-19 cases in chest x-ray images. Approach: The ResNet-101 architecture is adopted as the main network with more than 44 millions parameters. The whole net is trained using the large size of [Formula: see text] x-ray images. The heatmap under the region of interest of segmented lung is constructed to visualize and emphasize signals of COVID-19 in each input x-ray image. Lungs are segmented using the pretrained U-Net. The confidence score of being COVID-19 is also calculated for each classification result. Results: The proposed solution is evaluated based on COVID-19 and normal cases. It is also tested on unseen classes to validate a regularization of the constructed model. They include other normal cases where chest x-ray images are normal without any disease but with some small remarks, and other abnormal cases where chest x-ray images are abnormal with some other diseases containing remarks similar to COVID-19. The proposed method can achieve the sensitivity, specificity, and accuracy of 97%, 98%, and 98%, respectively. Conclusions: It can be concluded that the proposed solution can detect COVID-19 in a chest x-ray image. The heatmap and confidence score of the detection are also demonstrated, such that users or human experts can use them for a final diagnosis in practical usages. Society of Photo-Optical Instrumentation Engineers 2021-01-09 2021-01 /pmc/articles/PMC7804292/ /pubmed/33457446 http://dx.doi.org/10.1117/1.JMI.8.S1.014001 Text en © 2021 The Authors https://creativecommons.org/licenses/by/4.0/ Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI. |
spellingShingle | Image Processing Kusakunniran, Worapan Karnjanapreechakorn, Sarattha Siriapisith, Thanongchai Borwarnginn, Punyanuch Sutassananon, Krittanat Tongdee, Trongtum Saiviroonporn, Pairash COVID-19 detection and heatmap generation in chest x-ray images |
title | COVID-19 detection and heatmap generation in chest x-ray images |
title_full | COVID-19 detection and heatmap generation in chest x-ray images |
title_fullStr | COVID-19 detection and heatmap generation in chest x-ray images |
title_full_unstemmed | COVID-19 detection and heatmap generation in chest x-ray images |
title_short | COVID-19 detection and heatmap generation in chest x-ray images |
title_sort | covid-19 detection and heatmap generation in chest x-ray images |
topic | Image Processing |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7804292/ https://www.ncbi.nlm.nih.gov/pubmed/33457446 http://dx.doi.org/10.1117/1.JMI.8.S1.014001 |
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