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Foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach
The purpose of this study was to introduce a new deep learning (DL) model for segmentation of the fovea avascular zone (FAZ) in en face optical coherence tomography angiography (OCTA) and compare the results with those of the device’s built-in software and manual measurements in healthy subjects and...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7806603/ https://www.ncbi.nlm.nih.gov/pubmed/33441825 http://dx.doi.org/10.1038/s41598-020-80058-x |
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author | Mirshahi, Reza Anvari, Pasha Riazi-Esfahani, Hamid Sardarinia, Mahsa Naseripour, Masood Falavarjani, Khalil Ghasemi |
author_facet | Mirshahi, Reza Anvari, Pasha Riazi-Esfahani, Hamid Sardarinia, Mahsa Naseripour, Masood Falavarjani, Khalil Ghasemi |
author_sort | Mirshahi, Reza |
collection | PubMed |
description | The purpose of this study was to introduce a new deep learning (DL) model for segmentation of the fovea avascular zone (FAZ) in en face optical coherence tomography angiography (OCTA) and compare the results with those of the device’s built-in software and manual measurements in healthy subjects and diabetic patients. In this retrospective study, FAZ borders were delineated in the inner retinal slab of 3 × 3 enface OCTA images of 131 eyes of 88 diabetic patients and 32 eyes of 18 healthy subjects. To train a deep convolutional neural network (CNN) model, 126 enface OCTA images (104 eyes with diabetic retinopathy and 22 normal eyes) were used as training/validation dataset. Then, the accuracy of the model was evaluated using a dataset consisting of OCTA images of 10 normal eyes and 27 eyes with diabetic retinopathy. The CNN model was based on Detectron2, an open-source modular object detection library. In addition, automated FAZ measurements were conducted using the device’s built-in commercial software, and manual FAZ delineation was performed using ImageJ software. Bland–Altman analysis was used to show 95% limit of agreement (95% LoA) between different methods. The mean dice similarity coefficient of the DL model was 0.94 ± 0.04 in the testing dataset. There was excellent agreement between automated, DL model and manual measurements of FAZ in healthy subjects (95% LoA of − 0.005 to 0.026 mm(2) between automated and manual measurement and 0.000 to 0.009 mm(2) between DL and manual FAZ area). In diabetic eyes, the agreement between DL and manual measurements was excellent (95% LoA of − 0.063 to 0.095), however, there was a poor agreement between the automated and manual method (95% LoA of − 0.186 to 0.331). The presence of diabetic macular edema and intraretinal cysts at the fovea were associated with erroneous FAZ measurements by the device’s built-in software. In conclusion, the DL model showed an excellent accuracy in detection of FAZ border in enfaces OCTA images of both diabetic patients and healthy subjects. The DL and manual measurements outperformed the automated measurements of the built-in software. |
format | Online Article Text |
id | pubmed-7806603 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78066032021-01-14 Foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach Mirshahi, Reza Anvari, Pasha Riazi-Esfahani, Hamid Sardarinia, Mahsa Naseripour, Masood Falavarjani, Khalil Ghasemi Sci Rep Article The purpose of this study was to introduce a new deep learning (DL) model for segmentation of the fovea avascular zone (FAZ) in en face optical coherence tomography angiography (OCTA) and compare the results with those of the device’s built-in software and manual measurements in healthy subjects and diabetic patients. In this retrospective study, FAZ borders were delineated in the inner retinal slab of 3 × 3 enface OCTA images of 131 eyes of 88 diabetic patients and 32 eyes of 18 healthy subjects. To train a deep convolutional neural network (CNN) model, 126 enface OCTA images (104 eyes with diabetic retinopathy and 22 normal eyes) were used as training/validation dataset. Then, the accuracy of the model was evaluated using a dataset consisting of OCTA images of 10 normal eyes and 27 eyes with diabetic retinopathy. The CNN model was based on Detectron2, an open-source modular object detection library. In addition, automated FAZ measurements were conducted using the device’s built-in commercial software, and manual FAZ delineation was performed using ImageJ software. Bland–Altman analysis was used to show 95% limit of agreement (95% LoA) between different methods. The mean dice similarity coefficient of the DL model was 0.94 ± 0.04 in the testing dataset. There was excellent agreement between automated, DL model and manual measurements of FAZ in healthy subjects (95% LoA of − 0.005 to 0.026 mm(2) between automated and manual measurement and 0.000 to 0.009 mm(2) between DL and manual FAZ area). In diabetic eyes, the agreement between DL and manual measurements was excellent (95% LoA of − 0.063 to 0.095), however, there was a poor agreement between the automated and manual method (95% LoA of − 0.186 to 0.331). The presence of diabetic macular edema and intraretinal cysts at the fovea were associated with erroneous FAZ measurements by the device’s built-in software. In conclusion, the DL model showed an excellent accuracy in detection of FAZ border in enfaces OCTA images of both diabetic patients and healthy subjects. The DL and manual measurements outperformed the automated measurements of the built-in software. Nature Publishing Group UK 2021-01-13 /pmc/articles/PMC7806603/ /pubmed/33441825 http://dx.doi.org/10.1038/s41598-020-80058-x Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Mirshahi, Reza Anvari, Pasha Riazi-Esfahani, Hamid Sardarinia, Mahsa Naseripour, Masood Falavarjani, Khalil Ghasemi Foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach |
title | Foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach |
title_full | Foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach |
title_fullStr | Foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach |
title_full_unstemmed | Foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach |
title_short | Foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach |
title_sort | foveal avascular zone segmentation in optical coherence tomography angiography images using a deep learning approach |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7806603/ https://www.ncbi.nlm.nih.gov/pubmed/33441825 http://dx.doi.org/10.1038/s41598-020-80058-x |
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