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An encryption–decryption framework to validating single-particle imaging
We propose an encryption–decryption framework for validating diffraction intensity volumes reconstructed using single-particle imaging (SPI) with X-ray free-electron lasers (XFELs) when the ground truth volume is absent. This conceptual framework exploits each reconstructed volumes’ ability to decip...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7806625/ https://www.ncbi.nlm.nih.gov/pubmed/33441629 http://dx.doi.org/10.1038/s41598-020-79589-0 |
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author | Shen, Zhou Teo, Colin Zhi Wei Ayyer, Kartik Loh, N. Duane |
author_facet | Shen, Zhou Teo, Colin Zhi Wei Ayyer, Kartik Loh, N. Duane |
author_sort | Shen, Zhou |
collection | PubMed |
description | We propose an encryption–decryption framework for validating diffraction intensity volumes reconstructed using single-particle imaging (SPI) with X-ray free-electron lasers (XFELs) when the ground truth volume is absent. This conceptual framework exploits each reconstructed volumes’ ability to decipher latent variables (e.g. orientations) of unseen sentinel diffraction patterns. Using this framework, we quantify novel measures of orientation disconcurrence, inconsistency, and disagreement between the decryptions by two independently reconstructed volumes. We also study how these measures can be used to define data sufficiency and its relation to spatial resolution, and the practical consequences of focusing XFEL pulses to smaller foci. This conceptual framework overcomes critical ambiguities in using Fourier Shell Correlation (FSC) as a validation measure for SPI. Finally, we show how this encryption-decryption framework naturally leads to an information-theoretic reformulation of the resolving power of XFEL-SPI, which we hope will lead to principled frameworks for experiment and instrument design. |
format | Online Article Text |
id | pubmed-7806625 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78066252021-01-14 An encryption–decryption framework to validating single-particle imaging Shen, Zhou Teo, Colin Zhi Wei Ayyer, Kartik Loh, N. Duane Sci Rep Article We propose an encryption–decryption framework for validating diffraction intensity volumes reconstructed using single-particle imaging (SPI) with X-ray free-electron lasers (XFELs) when the ground truth volume is absent. This conceptual framework exploits each reconstructed volumes’ ability to decipher latent variables (e.g. orientations) of unseen sentinel diffraction patterns. Using this framework, we quantify novel measures of orientation disconcurrence, inconsistency, and disagreement between the decryptions by two independently reconstructed volumes. We also study how these measures can be used to define data sufficiency and its relation to spatial resolution, and the practical consequences of focusing XFEL pulses to smaller foci. This conceptual framework overcomes critical ambiguities in using Fourier Shell Correlation (FSC) as a validation measure for SPI. Finally, we show how this encryption-decryption framework naturally leads to an information-theoretic reformulation of the resolving power of XFEL-SPI, which we hope will lead to principled frameworks for experiment and instrument design. Nature Publishing Group UK 2021-01-13 /pmc/articles/PMC7806625/ /pubmed/33441629 http://dx.doi.org/10.1038/s41598-020-79589-0 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Shen, Zhou Teo, Colin Zhi Wei Ayyer, Kartik Loh, N. Duane An encryption–decryption framework to validating single-particle imaging |
title | An encryption–decryption framework to validating single-particle imaging |
title_full | An encryption–decryption framework to validating single-particle imaging |
title_fullStr | An encryption–decryption framework to validating single-particle imaging |
title_full_unstemmed | An encryption–decryption framework to validating single-particle imaging |
title_short | An encryption–decryption framework to validating single-particle imaging |
title_sort | encryption–decryption framework to validating single-particle imaging |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7806625/ https://www.ncbi.nlm.nih.gov/pubmed/33441629 http://dx.doi.org/10.1038/s41598-020-79589-0 |
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