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A pilot study of eDNA metabarcoding to estimate plant biodiversity by an alpine glacier core (Adamello glacier, North Italy)

Current biodiversity loss is a major concern and thus biodiversity assessment of modern ecosystems is compelling and needs to be contextualized on a longer timescale. High Throughput Sequencing (HTS) is progressively becoming a major source of data on biodiversity time series. In this multi proxy st...

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Autores principales: Varotto, Claudio, Pindo, Massimo, Bertoni, Elena, Casarotto, Christian, Camin, Federica, Girardi, Matteo, Maggi, Valter, Cristofori, Antonella
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7807053/
https://www.ncbi.nlm.nih.gov/pubmed/33441696
http://dx.doi.org/10.1038/s41598-020-79738-5
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author Varotto, Claudio
Pindo, Massimo
Bertoni, Elena
Casarotto, Christian
Camin, Federica
Girardi, Matteo
Maggi, Valter
Cristofori, Antonella
author_facet Varotto, Claudio
Pindo, Massimo
Bertoni, Elena
Casarotto, Christian
Camin, Federica
Girardi, Matteo
Maggi, Valter
Cristofori, Antonella
author_sort Varotto, Claudio
collection PubMed
description Current biodiversity loss is a major concern and thus biodiversity assessment of modern ecosystems is compelling and needs to be contextualized on a longer timescale. High Throughput Sequencing (HTS) is progressively becoming a major source of data on biodiversity time series. In this multi proxy study, we tested, for the first time, the potential of HTS to estimate plant biodiversity archived in the surface layers of a temperate alpine glacier, amplifying the trnL barcode for vascular plants from eDNA of firn samples. A 573 cm long core was drilled by the Adamello glacier and cut into sections; produced samples were analyzed for physical properties, stable isotope ratio, and plant biodiversity by eDNA metabarcoding and conventional light microscopy analysis. Results highlighted the presence of pollen and plant remains within the distinct layers of snow, firn and ice. While stable isotope ratio showed a scarcely informative pattern, DNA metabarcoding described distinct plant species composition among the different samples, with a broad taxonomic representation of the biodiversity of the catchment area and a high-ranking resolution. New knowledge on climate and plant biodiversity changes of large catchment areas can be obtained by this novel approach, relevant for future estimates of climate change effects.
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spelling pubmed-78070532021-01-14 A pilot study of eDNA metabarcoding to estimate plant biodiversity by an alpine glacier core (Adamello glacier, North Italy) Varotto, Claudio Pindo, Massimo Bertoni, Elena Casarotto, Christian Camin, Federica Girardi, Matteo Maggi, Valter Cristofori, Antonella Sci Rep Article Current biodiversity loss is a major concern and thus biodiversity assessment of modern ecosystems is compelling and needs to be contextualized on a longer timescale. High Throughput Sequencing (HTS) is progressively becoming a major source of data on biodiversity time series. In this multi proxy study, we tested, for the first time, the potential of HTS to estimate plant biodiversity archived in the surface layers of a temperate alpine glacier, amplifying the trnL barcode for vascular plants from eDNA of firn samples. A 573 cm long core was drilled by the Adamello glacier and cut into sections; produced samples were analyzed for physical properties, stable isotope ratio, and plant biodiversity by eDNA metabarcoding and conventional light microscopy analysis. Results highlighted the presence of pollen and plant remains within the distinct layers of snow, firn and ice. While stable isotope ratio showed a scarcely informative pattern, DNA metabarcoding described distinct plant species composition among the different samples, with a broad taxonomic representation of the biodiversity of the catchment area and a high-ranking resolution. New knowledge on climate and plant biodiversity changes of large catchment areas can be obtained by this novel approach, relevant for future estimates of climate change effects. Nature Publishing Group UK 2021-01-13 /pmc/articles/PMC7807053/ /pubmed/33441696 http://dx.doi.org/10.1038/s41598-020-79738-5 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Varotto, Claudio
Pindo, Massimo
Bertoni, Elena
Casarotto, Christian
Camin, Federica
Girardi, Matteo
Maggi, Valter
Cristofori, Antonella
A pilot study of eDNA metabarcoding to estimate plant biodiversity by an alpine glacier core (Adamello glacier, North Italy)
title A pilot study of eDNA metabarcoding to estimate plant biodiversity by an alpine glacier core (Adamello glacier, North Italy)
title_full A pilot study of eDNA metabarcoding to estimate plant biodiversity by an alpine glacier core (Adamello glacier, North Italy)
title_fullStr A pilot study of eDNA metabarcoding to estimate plant biodiversity by an alpine glacier core (Adamello glacier, North Italy)
title_full_unstemmed A pilot study of eDNA metabarcoding to estimate plant biodiversity by an alpine glacier core (Adamello glacier, North Italy)
title_short A pilot study of eDNA metabarcoding to estimate plant biodiversity by an alpine glacier core (Adamello glacier, North Italy)
title_sort pilot study of edna metabarcoding to estimate plant biodiversity by an alpine glacier core (adamello glacier, north italy)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7807053/
https://www.ncbi.nlm.nih.gov/pubmed/33441696
http://dx.doi.org/10.1038/s41598-020-79738-5
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