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Integral Analysis of the RNA Binding Protein-associated Prognostic Model for Renal Cell Carcinoma

RNA binding protein (RBPs) dysregulation has been reported in various malignant tumors and plays a pivotal role in tumor carcinogenesis and progression. However, the underlying mechanisms in renal cell carcinoma (RCC) are still unknown. In the present study, we performed a bioinformatics analysis us...

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Autores principales: Qin, Xin, Liu, Zhengfang, Yan, Keqiang, Fang, Zhiqing, Fan, Yidong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Ivyspring International Publisher 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7807188/
https://www.ncbi.nlm.nih.gov/pubmed/33456353
http://dx.doi.org/10.7150/ijms.50704
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author Qin, Xin
Liu, Zhengfang
Yan, Keqiang
Fang, Zhiqing
Fan, Yidong
author_facet Qin, Xin
Liu, Zhengfang
Yan, Keqiang
Fang, Zhiqing
Fan, Yidong
author_sort Qin, Xin
collection PubMed
description RNA binding protein (RBPs) dysregulation has been reported in various malignant tumors and plays a pivotal role in tumor carcinogenesis and progression. However, the underlying mechanisms in renal cell carcinoma (RCC) are still unknown. In the present study, we performed a bioinformatics analysis using data from TCGA database to explore the expression and prognostic value of RBPs. We identified 125 differently expressed RBPs between tumor and normal tissue in RCC patients, including 87 upregulated and 38 downregulated RBPs. Eight RBPs (RPL22L1, RNASE2, RNASE3, EZH2, DDX25, DQX1, EXOSC5, DDX47) were selected as prognosis-related RBPs and used to construct a risk score model. In the risk score model, the high-risk subgroup had a poorer overall survival (OS) than the low-risk subgroup, and we divided the 539 RCC patients into two groups and conducted a time-dependent receiver operating characteristic (ROC) analysis to further test the prognostic ability of the eight hub RBPs. The area under the curve (AUC) of the ROC curve was 0.728 in train-group and 0.688 in test-group, indicating a good prognostic model. More importantly, we established a nomogram based on the selected eight RBPs. The eight selected RBPS have predictive value for RCC patients, with potential applications in clinical decision-making and individualized treatment.
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spelling pubmed-78071882021-01-15 Integral Analysis of the RNA Binding Protein-associated Prognostic Model for Renal Cell Carcinoma Qin, Xin Liu, Zhengfang Yan, Keqiang Fang, Zhiqing Fan, Yidong Int J Med Sci Research Paper RNA binding protein (RBPs) dysregulation has been reported in various malignant tumors and plays a pivotal role in tumor carcinogenesis and progression. However, the underlying mechanisms in renal cell carcinoma (RCC) are still unknown. In the present study, we performed a bioinformatics analysis using data from TCGA database to explore the expression and prognostic value of RBPs. We identified 125 differently expressed RBPs between tumor and normal tissue in RCC patients, including 87 upregulated and 38 downregulated RBPs. Eight RBPs (RPL22L1, RNASE2, RNASE3, EZH2, DDX25, DQX1, EXOSC5, DDX47) were selected as prognosis-related RBPs and used to construct a risk score model. In the risk score model, the high-risk subgroup had a poorer overall survival (OS) than the low-risk subgroup, and we divided the 539 RCC patients into two groups and conducted a time-dependent receiver operating characteristic (ROC) analysis to further test the prognostic ability of the eight hub RBPs. The area under the curve (AUC) of the ROC curve was 0.728 in train-group and 0.688 in test-group, indicating a good prognostic model. More importantly, we established a nomogram based on the selected eight RBPs. The eight selected RBPS have predictive value for RCC patients, with potential applications in clinical decision-making and individualized treatment. Ivyspring International Publisher 2021-01-01 /pmc/articles/PMC7807188/ /pubmed/33456353 http://dx.doi.org/10.7150/ijms.50704 Text en © The author(s) This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/). See http://ivyspring.com/terms for full terms and conditions.
spellingShingle Research Paper
Qin, Xin
Liu, Zhengfang
Yan, Keqiang
Fang, Zhiqing
Fan, Yidong
Integral Analysis of the RNA Binding Protein-associated Prognostic Model for Renal Cell Carcinoma
title Integral Analysis of the RNA Binding Protein-associated Prognostic Model for Renal Cell Carcinoma
title_full Integral Analysis of the RNA Binding Protein-associated Prognostic Model for Renal Cell Carcinoma
title_fullStr Integral Analysis of the RNA Binding Protein-associated Prognostic Model for Renal Cell Carcinoma
title_full_unstemmed Integral Analysis of the RNA Binding Protein-associated Prognostic Model for Renal Cell Carcinoma
title_short Integral Analysis of the RNA Binding Protein-associated Prognostic Model for Renal Cell Carcinoma
title_sort integral analysis of the rna binding protein-associated prognostic model for renal cell carcinoma
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7807188/
https://www.ncbi.nlm.nih.gov/pubmed/33456353
http://dx.doi.org/10.7150/ijms.50704
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