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Bioinformatic gene analysis for possible biomarkers and therapeutic targets of hypertension-related renal cell carcinoma
BACKGROUND: Renal cell carcinoma (RCC) is one of the most prevalent malignant tumors of the urinary system. Hypertension can cause hypertensive nephropathy (HN). Meanwhile, Hypertension is considered to be related to kidney cancer. We analyzed co-expressed genes to find out the relationship between...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
AME Publishing Company
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7807377/ https://www.ncbi.nlm.nih.gov/pubmed/33457239 http://dx.doi.org/10.21037/tau-20-817 |
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author | Huang, Wenjie Wu, Ke Wu, Ruoyu Chen, Zhiguo Zhai, Wei Zheng, Junhua |
author_facet | Huang, Wenjie Wu, Ke Wu, Ruoyu Chen, Zhiguo Zhai, Wei Zheng, Junhua |
author_sort | Huang, Wenjie |
collection | PubMed |
description | BACKGROUND: Renal cell carcinoma (RCC) is one of the most prevalent malignant tumors of the urinary system. Hypertension can cause hypertensive nephropathy (HN). Meanwhile, Hypertension is considered to be related to kidney cancer. We analyzed co-expressed genes to find out the relationship between hypertension and RCC and show possible biomarkers and novel therapeutic targets of hypertension-related RCC. METHODS: We identified the differentially expressed genes (DEGs) of HN and RCC through analyzing Gene Expression Omnibus (GEO) datasets GSE99339, GSE99325, GSE53757 and GSE15641 by means of bioinformatics analysis, respectively. Then we evaluated these genes with protein-protein interaction (PPI) networks, Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis and CTD database. Subsequently, we verified co-expressed DEGs with Gene Expression Profiling Interactive Analysis (GEPIA) database. Finally, corresponding predicted miRNAs of co-expressed DEGs were identified and verified via mirDIP database and Starbase, respectively. RESULTS: We identified 9 co-expressed DEGs, including BCAT1, CORO1A, CRIP1, ESRRG, FN1, LYZ, PYCARD, SAP30, and PTRF. CRIP1 and ESRRG and their corresponding predicted miRNAs, especially hsa-miR-221-5p, hsa-miR-205-5p, hsa-miR-152-3p and hsa-miR-137 may be notably related to hypertension-related RCC. CONCLUSIONS: CRIP1 and ESRRG genes have great potential to become novel biomarkers and therapeutic targets concerning hypertension-related RCC. |
format | Online Article Text |
id | pubmed-7807377 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | AME Publishing Company |
record_format | MEDLINE/PubMed |
spelling | pubmed-78073772021-01-15 Bioinformatic gene analysis for possible biomarkers and therapeutic targets of hypertension-related renal cell carcinoma Huang, Wenjie Wu, Ke Wu, Ruoyu Chen, Zhiguo Zhai, Wei Zheng, Junhua Transl Androl Urol Original Article BACKGROUND: Renal cell carcinoma (RCC) is one of the most prevalent malignant tumors of the urinary system. Hypertension can cause hypertensive nephropathy (HN). Meanwhile, Hypertension is considered to be related to kidney cancer. We analyzed co-expressed genes to find out the relationship between hypertension and RCC and show possible biomarkers and novel therapeutic targets of hypertension-related RCC. METHODS: We identified the differentially expressed genes (DEGs) of HN and RCC through analyzing Gene Expression Omnibus (GEO) datasets GSE99339, GSE99325, GSE53757 and GSE15641 by means of bioinformatics analysis, respectively. Then we evaluated these genes with protein-protein interaction (PPI) networks, Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis and CTD database. Subsequently, we verified co-expressed DEGs with Gene Expression Profiling Interactive Analysis (GEPIA) database. Finally, corresponding predicted miRNAs of co-expressed DEGs were identified and verified via mirDIP database and Starbase, respectively. RESULTS: We identified 9 co-expressed DEGs, including BCAT1, CORO1A, CRIP1, ESRRG, FN1, LYZ, PYCARD, SAP30, and PTRF. CRIP1 and ESRRG and their corresponding predicted miRNAs, especially hsa-miR-221-5p, hsa-miR-205-5p, hsa-miR-152-3p and hsa-miR-137 may be notably related to hypertension-related RCC. CONCLUSIONS: CRIP1 and ESRRG genes have great potential to become novel biomarkers and therapeutic targets concerning hypertension-related RCC. AME Publishing Company 2020-12 /pmc/articles/PMC7807377/ /pubmed/33457239 http://dx.doi.org/10.21037/tau-20-817 Text en 2020 Translational Andrology and Urology. All rights reserved. https://creativecommons.org/licenses/by-nc-nd/4.0/Open Access Statement: This is an Open Access article distributed in accordance with the Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International License (CC BY-NC-ND 4.0), which permits the non-commercial replication and distribution of the article with the strict proviso that no changes or edits are made and the original work is properly cited (including links to both the formal publication through the relevant DOI and the license). See: https://creativecommons.org/licenses/by-nc-nd/4.0 (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Original Article Huang, Wenjie Wu, Ke Wu, Ruoyu Chen, Zhiguo Zhai, Wei Zheng, Junhua Bioinformatic gene analysis for possible biomarkers and therapeutic targets of hypertension-related renal cell carcinoma |
title | Bioinformatic gene analysis for possible biomarkers and therapeutic targets of hypertension-related renal cell carcinoma |
title_full | Bioinformatic gene analysis for possible biomarkers and therapeutic targets of hypertension-related renal cell carcinoma |
title_fullStr | Bioinformatic gene analysis for possible biomarkers and therapeutic targets of hypertension-related renal cell carcinoma |
title_full_unstemmed | Bioinformatic gene analysis for possible biomarkers and therapeutic targets of hypertension-related renal cell carcinoma |
title_short | Bioinformatic gene analysis for possible biomarkers and therapeutic targets of hypertension-related renal cell carcinoma |
title_sort | bioinformatic gene analysis for possible biomarkers and therapeutic targets of hypertension-related renal cell carcinoma |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7807377/ https://www.ncbi.nlm.nih.gov/pubmed/33457239 http://dx.doi.org/10.21037/tau-20-817 |
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