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Deep learning-based automatic delineation of the hippocampus by MRI: geometric and dosimetric evaluation
BACKGROUND: Whole brain radiotherapy (WBRT) can impair patients’ cognitive function. Hippocampal avoidance during WBRT can potentially prevent this side effect. However, manually delineating the target area is time-consuming and difficult. Here, we proposed a credible approach of automatic hippocamp...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7807715/ https://www.ncbi.nlm.nih.gov/pubmed/33446238 http://dx.doi.org/10.1186/s13014-020-01724-y |
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author | Pan, Kaicheng Zhao, Lei Gu, Song Tang, Yi Wang, Jiahao Yu, Wen Zhu, Lucheng Feng, Qi Su, Ruipeng Xu, Zhiyong Li, Xiadong Ding, Zhongxiang Fu, Xiaolong Ma, Shenglin Yan, Jun Kang, Shigong Zhou, Tao Xia, Bing |
author_facet | Pan, Kaicheng Zhao, Lei Gu, Song Tang, Yi Wang, Jiahao Yu, Wen Zhu, Lucheng Feng, Qi Su, Ruipeng Xu, Zhiyong Li, Xiadong Ding, Zhongxiang Fu, Xiaolong Ma, Shenglin Yan, Jun Kang, Shigong Zhou, Tao Xia, Bing |
author_sort | Pan, Kaicheng |
collection | PubMed |
description | BACKGROUND: Whole brain radiotherapy (WBRT) can impair patients’ cognitive function. Hippocampal avoidance during WBRT can potentially prevent this side effect. However, manually delineating the target area is time-consuming and difficult. Here, we proposed a credible approach of automatic hippocampal delineation based on convolutional neural networks. METHODS: Referring to the hippocampus contouring atlas proposed by RTOG 0933, we manually delineated (MD) the hippocampus on the MRI data sets (3-dimensional T1-weighted with slice thickness of 1 mm, n = 175), which were used to construct a three-dimensional convolutional neural network aiming for the hippocampus automatic delineation (AD). The performance of this AD tool was tested on three cohorts: (a) 3D T1 MRI with 1-mm slice thickness (n = 30); (b) non-3D T1-weighted MRI with 3-mm slice thickness (n = 19); (c) non-3D T1-weighted MRI with 1-mm slice thickness (n = 11). All MRIs confirmed with normal hippocampus has not been violated by any disease. Virtual radiation plans were created for AD and MD hippocampi in cohort c to evaluate the clinical feasibility of the artificial intelligence approach. Statistical analyses were performed using SPSS version 23. P < 0.05 was considered significant. RESULTS: The Dice similarity coefficient (DSC) and Average Hausdorff Distance (AVD) between the AD and MD hippocampi are 0.86 ± 0.028 and 0.18 ± 0.050 cm in cohort a, 0.76 ± 0.035 and 0.31 ± 0.064 cm in cohort b, 0.80 ± 0.015 and 0.24 ± 0.021 cm in cohort c, respectively. The DSC and AVD in cohort a were better than those in cohorts b and c (P < 0.01). There is no significant difference between the radiotherapy plans generated using the AD and MD hippocampi. CONCLUSION: The AD of the hippocampus based on a deep learning algorithm showed satisfying results, which could have a positive impact on improving delineation accuracy and reducing work load. |
format | Online Article Text |
id | pubmed-7807715 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-78077152021-01-14 Deep learning-based automatic delineation of the hippocampus by MRI: geometric and dosimetric evaluation Pan, Kaicheng Zhao, Lei Gu, Song Tang, Yi Wang, Jiahao Yu, Wen Zhu, Lucheng Feng, Qi Su, Ruipeng Xu, Zhiyong Li, Xiadong Ding, Zhongxiang Fu, Xiaolong Ma, Shenglin Yan, Jun Kang, Shigong Zhou, Tao Xia, Bing Radiat Oncol Research BACKGROUND: Whole brain radiotherapy (WBRT) can impair patients’ cognitive function. Hippocampal avoidance during WBRT can potentially prevent this side effect. However, manually delineating the target area is time-consuming and difficult. Here, we proposed a credible approach of automatic hippocampal delineation based on convolutional neural networks. METHODS: Referring to the hippocampus contouring atlas proposed by RTOG 0933, we manually delineated (MD) the hippocampus on the MRI data sets (3-dimensional T1-weighted with slice thickness of 1 mm, n = 175), which were used to construct a three-dimensional convolutional neural network aiming for the hippocampus automatic delineation (AD). The performance of this AD tool was tested on three cohorts: (a) 3D T1 MRI with 1-mm slice thickness (n = 30); (b) non-3D T1-weighted MRI with 3-mm slice thickness (n = 19); (c) non-3D T1-weighted MRI with 1-mm slice thickness (n = 11). All MRIs confirmed with normal hippocampus has not been violated by any disease. Virtual radiation plans were created for AD and MD hippocampi in cohort c to evaluate the clinical feasibility of the artificial intelligence approach. Statistical analyses were performed using SPSS version 23. P < 0.05 was considered significant. RESULTS: The Dice similarity coefficient (DSC) and Average Hausdorff Distance (AVD) between the AD and MD hippocampi are 0.86 ± 0.028 and 0.18 ± 0.050 cm in cohort a, 0.76 ± 0.035 and 0.31 ± 0.064 cm in cohort b, 0.80 ± 0.015 and 0.24 ± 0.021 cm in cohort c, respectively. The DSC and AVD in cohort a were better than those in cohorts b and c (P < 0.01). There is no significant difference between the radiotherapy plans generated using the AD and MD hippocampi. CONCLUSION: The AD of the hippocampus based on a deep learning algorithm showed satisfying results, which could have a positive impact on improving delineation accuracy and reducing work load. BioMed Central 2021-01-14 /pmc/articles/PMC7807715/ /pubmed/33446238 http://dx.doi.org/10.1186/s13014-020-01724-y Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Pan, Kaicheng Zhao, Lei Gu, Song Tang, Yi Wang, Jiahao Yu, Wen Zhu, Lucheng Feng, Qi Su, Ruipeng Xu, Zhiyong Li, Xiadong Ding, Zhongxiang Fu, Xiaolong Ma, Shenglin Yan, Jun Kang, Shigong Zhou, Tao Xia, Bing Deep learning-based automatic delineation of the hippocampus by MRI: geometric and dosimetric evaluation |
title | Deep learning-based automatic delineation of the hippocampus by MRI: geometric and dosimetric evaluation |
title_full | Deep learning-based automatic delineation of the hippocampus by MRI: geometric and dosimetric evaluation |
title_fullStr | Deep learning-based automatic delineation of the hippocampus by MRI: geometric and dosimetric evaluation |
title_full_unstemmed | Deep learning-based automatic delineation of the hippocampus by MRI: geometric and dosimetric evaluation |
title_short | Deep learning-based automatic delineation of the hippocampus by MRI: geometric and dosimetric evaluation |
title_sort | deep learning-based automatic delineation of the hippocampus by mri: geometric and dosimetric evaluation |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7807715/ https://www.ncbi.nlm.nih.gov/pubmed/33446238 http://dx.doi.org/10.1186/s13014-020-01724-y |
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