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An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes
We provide an algorithm for the construction and analysis of autocorrelation (information) functions of gene nucleotide sequences. As a measure of correlation between discrete random variables, we use normalized mutual information. The information functions are indicative of the degree of structured...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Korea Genome Organization
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808870/ https://www.ncbi.nlm.nih.gov/pubmed/33412757 http://dx.doi.org/10.5808/GI.2020.18.4.e41 |
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author | Blokh, David Gitarts, Joseph Stambler, Ilia |
author_facet | Blokh, David Gitarts, Joseph Stambler, Ilia |
author_sort | Blokh, David |
collection | PubMed |
description | We provide an algorithm for the construction and analysis of autocorrelation (information) functions of gene nucleotide sequences. As a measure of correlation between discrete random variables, we use normalized mutual information. The information functions are indicative of the degree of structuredness of gene sequences. We construct the information functions for selected gene sequences. We find a significant difference between information functions of genes of different types. We hypothesize that the features of information functions of gene nucleotide sequences are related to phenotypes of these genes. |
format | Online Article Text |
id | pubmed-7808870 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Korea Genome Organization |
record_format | MEDLINE/PubMed |
spelling | pubmed-78088702021-01-26 An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes Blokh, David Gitarts, Joseph Stambler, Ilia Genomics Inform Original Article We provide an algorithm for the construction and analysis of autocorrelation (information) functions of gene nucleotide sequences. As a measure of correlation between discrete random variables, we use normalized mutual information. The information functions are indicative of the degree of structuredness of gene sequences. We construct the information functions for selected gene sequences. We find a significant difference between information functions of genes of different types. We hypothesize that the features of information functions of gene nucleotide sequences are related to phenotypes of these genes. Korea Genome Organization 2020-12-08 /pmc/articles/PMC7808870/ /pubmed/33412757 http://dx.doi.org/10.5808/GI.2020.18.4.e41 Text en (c) 2020, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Blokh, David Gitarts, Joseph Stambler, Ilia An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes |
title | An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes |
title_full | An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes |
title_fullStr | An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes |
title_full_unstemmed | An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes |
title_short | An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes |
title_sort | information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808870/ https://www.ncbi.nlm.nih.gov/pubmed/33412757 http://dx.doi.org/10.5808/GI.2020.18.4.e41 |
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