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An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes

We provide an algorithm for the construction and analysis of autocorrelation (information) functions of gene nucleotide sequences. As a measure of correlation between discrete random variables, we use normalized mutual information. The information functions are indicative of the degree of structured...

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Detalles Bibliográficos
Autores principales: Blokh, David, Gitarts, Joseph, Stambler, Ilia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808870/
https://www.ncbi.nlm.nih.gov/pubmed/33412757
http://dx.doi.org/10.5808/GI.2020.18.4.e41
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author Blokh, David
Gitarts, Joseph
Stambler, Ilia
author_facet Blokh, David
Gitarts, Joseph
Stambler, Ilia
author_sort Blokh, David
collection PubMed
description We provide an algorithm for the construction and analysis of autocorrelation (information) functions of gene nucleotide sequences. As a measure of correlation between discrete random variables, we use normalized mutual information. The information functions are indicative of the degree of structuredness of gene sequences. We construct the information functions for selected gene sequences. We find a significant difference between information functions of genes of different types. We hypothesize that the features of information functions of gene nucleotide sequences are related to phenotypes of these genes.
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spelling pubmed-78088702021-01-26 An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes Blokh, David Gitarts, Joseph Stambler, Ilia Genomics Inform Original Article We provide an algorithm for the construction and analysis of autocorrelation (information) functions of gene nucleotide sequences. As a measure of correlation between discrete random variables, we use normalized mutual information. The information functions are indicative of the degree of structuredness of gene sequences. We construct the information functions for selected gene sequences. We find a significant difference between information functions of genes of different types. We hypothesize that the features of information functions of gene nucleotide sequences are related to phenotypes of these genes. Korea Genome Organization 2020-12-08 /pmc/articles/PMC7808870/ /pubmed/33412757 http://dx.doi.org/10.5808/GI.2020.18.4.e41 Text en (c) 2020, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Blokh, David
Gitarts, Joseph
Stambler, Ilia
An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes
title An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes
title_full An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes
title_fullStr An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes
title_full_unstemmed An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes
title_short An information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes
title_sort information-theoretical analysis of gene nucleotide sequence structuredness for a selection of aging and cancer-related genes
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808870/
https://www.ncbi.nlm.nih.gov/pubmed/33412757
http://dx.doi.org/10.5808/GI.2020.18.4.e41
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