Cargando…

BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system

We developed the BaSDAS (Barcode-Seq Data Analysis System), a GUI-based pooled knockout screening data analysis system, to facilitate the analysis of pooled knockout screen data easily and effectively by researchers with limited bioinformatics skills. The BaSDAS supports the analysis of various pool...

Descripción completa

Detalles Bibliográficos
Autores principales: Park, Young-Kyu, Yoon, Byoung-Ha, Park, Seung-Jin, Kim, Byung Kwon, Kim, Seon-Young
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korea Genome Organization 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808871/
https://www.ncbi.nlm.nih.gov/pubmed/33412762
http://dx.doi.org/10.5808/GI.2020.18.4.e46
_version_ 1783636994706898944
author Park, Young-Kyu
Yoon, Byoung-Ha
Park, Seung-Jin
Kim, Byung Kwon
Kim, Seon-Young
author_facet Park, Young-Kyu
Yoon, Byoung-Ha
Park, Seung-Jin
Kim, Byung Kwon
Kim, Seon-Young
author_sort Park, Young-Kyu
collection PubMed
description We developed the BaSDAS (Barcode-Seq Data Analysis System), a GUI-based pooled knockout screening data analysis system, to facilitate the analysis of pooled knockout screen data easily and effectively by researchers with limited bioinformatics skills. The BaSDAS supports the analysis of various pooled screening libraries, including yeast, human, and mouse libraries, and provides many useful statistical and visualization functions with a user-friendly web interface for convenience. We expect that BaSDAS will be a useful tool for the analysis of genome-wide screening data and will support the development of novel drugs based on functional genomics information.
format Online
Article
Text
id pubmed-7808871
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Korea Genome Organization
record_format MEDLINE/PubMed
spelling pubmed-78088712021-01-26 BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system Park, Young-Kyu Yoon, Byoung-Ha Park, Seung-Jin Kim, Byung Kwon Kim, Seon-Young Genomics Inform Application Note We developed the BaSDAS (Barcode-Seq Data Analysis System), a GUI-based pooled knockout screening data analysis system, to facilitate the analysis of pooled knockout screen data easily and effectively by researchers with limited bioinformatics skills. The BaSDAS supports the analysis of various pooled screening libraries, including yeast, human, and mouse libraries, and provides many useful statistical and visualization functions with a user-friendly web interface for convenience. We expect that BaSDAS will be a useful tool for the analysis of genome-wide screening data and will support the development of novel drugs based on functional genomics information. Korea Genome Organization 2020-12-11 /pmc/articles/PMC7808871/ /pubmed/33412762 http://dx.doi.org/10.5808/GI.2020.18.4.e46 Text en (c) 2020, Korea Genome Organization (CC) This is an open-access article distributed under the terms of the Creative Commons Attribution license(https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Application Note
Park, Young-Kyu
Yoon, Byoung-Ha
Park, Seung-Jin
Kim, Byung Kwon
Kim, Seon-Young
BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system
title BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system
title_full BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system
title_fullStr BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system
title_full_unstemmed BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system
title_short BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system
title_sort basdas: a web-based pooled crispr-cas9 knockout screening data analysis system
topic Application Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808871/
https://www.ncbi.nlm.nih.gov/pubmed/33412762
http://dx.doi.org/10.5808/GI.2020.18.4.e46
work_keys_str_mv AT parkyoungkyu basdasawebbasedpooledcrisprcas9knockoutscreeningdataanalysissystem
AT yoonbyoungha basdasawebbasedpooledcrisprcas9knockoutscreeningdataanalysissystem
AT parkseungjin basdasawebbasedpooledcrisprcas9knockoutscreeningdataanalysissystem
AT kimbyungkwon basdasawebbasedpooledcrisprcas9knockoutscreeningdataanalysissystem
AT kimseonyoung basdasawebbasedpooledcrisprcas9knockoutscreeningdataanalysissystem