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Predicting adult neuroscience intensive care unit admission from emergency department triage using a retrospective, tabular-free text machine learning approach

Early admission to the neurosciences intensive care unit (NSICU) is associated with improved patient outcomes. Natural language processing offers new possibilities for mining free text in electronic health record data. We sought to develop a machine learning model using both tabular and free text da...

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Autores principales: Klang, Eyal, Kummer, Benjamin R., Dangayach, Neha S., Zhong, Amy, Kia, M. Arash, Timsina, Prem, Cossentino, Ian, Costa, Anthony B., Levin, Matthew A., Oermann, Eric K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809037/
https://www.ncbi.nlm.nih.gov/pubmed/33446890
http://dx.doi.org/10.1038/s41598-021-80985-3
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author Klang, Eyal
Kummer, Benjamin R.
Dangayach, Neha S.
Zhong, Amy
Kia, M. Arash
Timsina, Prem
Cossentino, Ian
Costa, Anthony B.
Levin, Matthew A.
Oermann, Eric K.
author_facet Klang, Eyal
Kummer, Benjamin R.
Dangayach, Neha S.
Zhong, Amy
Kia, M. Arash
Timsina, Prem
Cossentino, Ian
Costa, Anthony B.
Levin, Matthew A.
Oermann, Eric K.
author_sort Klang, Eyal
collection PubMed
description Early admission to the neurosciences intensive care unit (NSICU) is associated with improved patient outcomes. Natural language processing offers new possibilities for mining free text in electronic health record data. We sought to develop a machine learning model using both tabular and free text data to identify patients requiring NSICU admission shortly after arrival to the emergency department (ED). We conducted a single-center, retrospective cohort study of adult patients at the Mount Sinai Hospital, an academic medical center in New York City. All patients presenting to our institutional ED between January 2014 and December 2018 were included. Structured (tabular) demographic, clinical, bed movement record data, and free text data from triage notes were extracted from our institutional data warehouse. A machine learning model was trained to predict likelihood of NSICU admission at 30 min from arrival to the ED. We identified 412,858 patients presenting to the ED over the study period, of whom 1900 (0.5%) were admitted to the NSICU. The daily median number of ED presentations was 231 (IQR 200–256) and the median time from ED presentation to the decision for NSICU admission was 169 min (IQR 80–324). A model trained only with text data had an area under the receiver-operating curve (AUC) of 0.90 (95% confidence interval (CI) 0.87–0.91). A structured data-only model had an AUC of 0.92 (95% CI 0.91–0.94). A combined model trained on structured and text data had an AUC of 0.93 (95% CI 0.92–0.95). At a false positive rate of 1:100 (99% specificity), the combined model was 58% sensitive for identifying NSICU admission. A machine learning model using structured and free text data can predict NSICU admission soon after ED arrival. This may potentially improve ED and NSICU resource allocation. Further studies should validate our findings.
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spelling pubmed-78090372021-01-15 Predicting adult neuroscience intensive care unit admission from emergency department triage using a retrospective, tabular-free text machine learning approach Klang, Eyal Kummer, Benjamin R. Dangayach, Neha S. Zhong, Amy Kia, M. Arash Timsina, Prem Cossentino, Ian Costa, Anthony B. Levin, Matthew A. Oermann, Eric K. Sci Rep Article Early admission to the neurosciences intensive care unit (NSICU) is associated with improved patient outcomes. Natural language processing offers new possibilities for mining free text in electronic health record data. We sought to develop a machine learning model using both tabular and free text data to identify patients requiring NSICU admission shortly after arrival to the emergency department (ED). We conducted a single-center, retrospective cohort study of adult patients at the Mount Sinai Hospital, an academic medical center in New York City. All patients presenting to our institutional ED between January 2014 and December 2018 were included. Structured (tabular) demographic, clinical, bed movement record data, and free text data from triage notes were extracted from our institutional data warehouse. A machine learning model was trained to predict likelihood of NSICU admission at 30 min from arrival to the ED. We identified 412,858 patients presenting to the ED over the study period, of whom 1900 (0.5%) were admitted to the NSICU. The daily median number of ED presentations was 231 (IQR 200–256) and the median time from ED presentation to the decision for NSICU admission was 169 min (IQR 80–324). A model trained only with text data had an area under the receiver-operating curve (AUC) of 0.90 (95% confidence interval (CI) 0.87–0.91). A structured data-only model had an AUC of 0.92 (95% CI 0.91–0.94). A combined model trained on structured and text data had an AUC of 0.93 (95% CI 0.92–0.95). At a false positive rate of 1:100 (99% specificity), the combined model was 58% sensitive for identifying NSICU admission. A machine learning model using structured and free text data can predict NSICU admission soon after ED arrival. This may potentially improve ED and NSICU resource allocation. Further studies should validate our findings. Nature Publishing Group UK 2021-01-14 /pmc/articles/PMC7809037/ /pubmed/33446890 http://dx.doi.org/10.1038/s41598-021-80985-3 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Klang, Eyal
Kummer, Benjamin R.
Dangayach, Neha S.
Zhong, Amy
Kia, M. Arash
Timsina, Prem
Cossentino, Ian
Costa, Anthony B.
Levin, Matthew A.
Oermann, Eric K.
Predicting adult neuroscience intensive care unit admission from emergency department triage using a retrospective, tabular-free text machine learning approach
title Predicting adult neuroscience intensive care unit admission from emergency department triage using a retrospective, tabular-free text machine learning approach
title_full Predicting adult neuroscience intensive care unit admission from emergency department triage using a retrospective, tabular-free text machine learning approach
title_fullStr Predicting adult neuroscience intensive care unit admission from emergency department triage using a retrospective, tabular-free text machine learning approach
title_full_unstemmed Predicting adult neuroscience intensive care unit admission from emergency department triage using a retrospective, tabular-free text machine learning approach
title_short Predicting adult neuroscience intensive care unit admission from emergency department triage using a retrospective, tabular-free text machine learning approach
title_sort predicting adult neuroscience intensive care unit admission from emergency department triage using a retrospective, tabular-free text machine learning approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809037/
https://www.ncbi.nlm.nih.gov/pubmed/33446890
http://dx.doi.org/10.1038/s41598-021-80985-3
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