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G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes
In clinical research, there is a growing interest in the use of propensity score-based methods to estimate causal effects. G-computation is an alternative because of its high statistical power. Machine learning is also increasingly used because of its possible robustness to model misspecification. I...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809122/ https://www.ncbi.nlm.nih.gov/pubmed/33446866 http://dx.doi.org/10.1038/s41598-021-81110-0 |
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author | Le Borgne, Florent Chatton, Arthur Léger, Maxime Lenain, Rémi Foucher, Yohann |
author_facet | Le Borgne, Florent Chatton, Arthur Léger, Maxime Lenain, Rémi Foucher, Yohann |
author_sort | Le Borgne, Florent |
collection | PubMed |
description | In clinical research, there is a growing interest in the use of propensity score-based methods to estimate causal effects. G-computation is an alternative because of its high statistical power. Machine learning is also increasingly used because of its possible robustness to model misspecification. In this paper, we aimed to propose an approach that combines machine learning and G-computation when both the outcome and the exposure status are binary and is able to deal with small samples. We evaluated the performances of several methods, including penalized logistic regressions, a neural network, a support vector machine, boosted classification and regression trees, and a super learner through simulations. We proposed six different scenarios characterised by various sample sizes, numbers of covariates and relationships between covariates, exposure statuses, and outcomes. We have also illustrated the application of these methods, in which they were used to estimate the efficacy of barbiturates prescribed during the first 24 h of an episode of intracranial hypertension. In the context of GC, for estimating the individual outcome probabilities in two counterfactual worlds, we reported that the super learner tended to outperform the other approaches in terms of both bias and variance, especially for small sample sizes. The support vector machine performed well, but its mean bias was slightly higher than that of the super learner. In the investigated scenarios, G-computation associated with the super learner was a performant method for drawing causal inferences, even from small sample sizes. |
format | Online Article Text |
id | pubmed-7809122 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-78091222021-01-15 G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes Le Borgne, Florent Chatton, Arthur Léger, Maxime Lenain, Rémi Foucher, Yohann Sci Rep Article In clinical research, there is a growing interest in the use of propensity score-based methods to estimate causal effects. G-computation is an alternative because of its high statistical power. Machine learning is also increasingly used because of its possible robustness to model misspecification. In this paper, we aimed to propose an approach that combines machine learning and G-computation when both the outcome and the exposure status are binary and is able to deal with small samples. We evaluated the performances of several methods, including penalized logistic regressions, a neural network, a support vector machine, boosted classification and regression trees, and a super learner through simulations. We proposed six different scenarios characterised by various sample sizes, numbers of covariates and relationships between covariates, exposure statuses, and outcomes. We have also illustrated the application of these methods, in which they were used to estimate the efficacy of barbiturates prescribed during the first 24 h of an episode of intracranial hypertension. In the context of GC, for estimating the individual outcome probabilities in two counterfactual worlds, we reported that the super learner tended to outperform the other approaches in terms of both bias and variance, especially for small sample sizes. The support vector machine performed well, but its mean bias was slightly higher than that of the super learner. In the investigated scenarios, G-computation associated with the super learner was a performant method for drawing causal inferences, even from small sample sizes. Nature Publishing Group UK 2021-01-14 /pmc/articles/PMC7809122/ /pubmed/33446866 http://dx.doi.org/10.1038/s41598-021-81110-0 Text en © The Author(s) 2021 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Le Borgne, Florent Chatton, Arthur Léger, Maxime Lenain, Rémi Foucher, Yohann G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes |
title | G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes |
title_full | G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes |
title_fullStr | G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes |
title_full_unstemmed | G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes |
title_short | G-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes |
title_sort | g-computation and machine learning for estimating the causal effects of binary exposure statuses on binary outcomes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809122/ https://www.ncbi.nlm.nih.gov/pubmed/33446866 http://dx.doi.org/10.1038/s41598-021-81110-0 |
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