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ScreenSeed as a novel high throughput seed germination phenotyping method

A high throughput phenotyping tool for seed germination, the ScreenSeed technology, was developed with the aim of screening genotype responsiveness and chemical drugs. This technology was presently used with Arabidopsis thaliana seeds to allow characterizing seed samples germination behavior by incu...

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Autores principales: Merieux, Nicolas, Cordier, Pierre, Wagner, Marie-Hélène, Ducournau, Sylvie, Aligon, Sophie, Job, Dominique, Grappin, Philippe, Grappin, Edwin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809209/
https://www.ncbi.nlm.nih.gov/pubmed/33446694
http://dx.doi.org/10.1038/s41598-020-79115-2
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author Merieux, Nicolas
Cordier, Pierre
Wagner, Marie-Hélène
Ducournau, Sylvie
Aligon, Sophie
Job, Dominique
Grappin, Philippe
Grappin, Edwin
author_facet Merieux, Nicolas
Cordier, Pierre
Wagner, Marie-Hélène
Ducournau, Sylvie
Aligon, Sophie
Job, Dominique
Grappin, Philippe
Grappin, Edwin
author_sort Merieux, Nicolas
collection PubMed
description A high throughput phenotyping tool for seed germination, the ScreenSeed technology, was developed with the aim of screening genotype responsiveness and chemical drugs. This technology was presently used with Arabidopsis thaliana seeds to allow characterizing seed samples germination behavior by incubating seeds in 96-well microplates under defined conditions and detecting radicle protrusion through the seed coat by automated image analysis. This study shows that this technology provides a fast procedure allowing to handle thousands of seeds without compromising repeatability or accuracy of the germination measurements. Potential biases of the experimental protocol were assessed through statistical analyses of germination kinetics. Comparison of the ScreenSeed procedure with commonly used germination tests based upon visual scoring displayed very similar germination kinetics.
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spelling pubmed-78092092021-01-15 ScreenSeed as a novel high throughput seed germination phenotyping method Merieux, Nicolas Cordier, Pierre Wagner, Marie-Hélène Ducournau, Sylvie Aligon, Sophie Job, Dominique Grappin, Philippe Grappin, Edwin Sci Rep Article A high throughput phenotyping tool for seed germination, the ScreenSeed technology, was developed with the aim of screening genotype responsiveness and chemical drugs. This technology was presently used with Arabidopsis thaliana seeds to allow characterizing seed samples germination behavior by incubating seeds in 96-well microplates under defined conditions and detecting radicle protrusion through the seed coat by automated image analysis. This study shows that this technology provides a fast procedure allowing to handle thousands of seeds without compromising repeatability or accuracy of the germination measurements. Potential biases of the experimental protocol were assessed through statistical analyses of germination kinetics. Comparison of the ScreenSeed procedure with commonly used germination tests based upon visual scoring displayed very similar germination kinetics. Nature Publishing Group UK 2021-01-14 /pmc/articles/PMC7809209/ /pubmed/33446694 http://dx.doi.org/10.1038/s41598-020-79115-2 Text en © The Author(s) 2021 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Merieux, Nicolas
Cordier, Pierre
Wagner, Marie-Hélène
Ducournau, Sylvie
Aligon, Sophie
Job, Dominique
Grappin, Philippe
Grappin, Edwin
ScreenSeed as a novel high throughput seed germination phenotyping method
title ScreenSeed as a novel high throughput seed germination phenotyping method
title_full ScreenSeed as a novel high throughput seed germination phenotyping method
title_fullStr ScreenSeed as a novel high throughput seed germination phenotyping method
title_full_unstemmed ScreenSeed as a novel high throughput seed germination phenotyping method
title_short ScreenSeed as a novel high throughput seed germination phenotyping method
title_sort screenseed as a novel high throughput seed germination phenotyping method
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809209/
https://www.ncbi.nlm.nih.gov/pubmed/33446694
http://dx.doi.org/10.1038/s41598-020-79115-2
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