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ECOPAMPA: A new tool for automatic fish schools detection and assessment from echo data

Accurate identification of aquatic organisms and their numerical abundance calculation using echo detection techniques remains a great challenge for marine researchers. A software architecture for echo data processing is presented in this article. Within it, it is discussed how to obtain energetic,...

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Autores principales: Villar, Sebastián A., Madirolas, Adrián, Cabreira, Ariel G., Rozenfeld, Alejandro, Acosta, Gerardo G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809380/
https://www.ncbi.nlm.nih.gov/pubmed/33490675
http://dx.doi.org/10.1016/j.heliyon.2021.e05906
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author Villar, Sebastián A.
Madirolas, Adrián
Cabreira, Ariel G.
Rozenfeld, Alejandro
Acosta, Gerardo G.
author_facet Villar, Sebastián A.
Madirolas, Adrián
Cabreira, Ariel G.
Rozenfeld, Alejandro
Acosta, Gerardo G.
author_sort Villar, Sebastián A.
collection PubMed
description Accurate identification of aquatic organisms and their numerical abundance calculation using echo detection techniques remains a great challenge for marine researchers. A software architecture for echo data processing is presented in this article. Within it, it is discussed how to obtain energetic, morphometric and bathymetric fish school descriptors to accurately identify different fish-species. To accomplish this task it was necessary to have a development platform that allowed reading echo data from a particular echosounder, to detect fish aggregations and then to calculate fish school descriptors that would be used for fish-species identification, in an automatic way. This article also describes thoroughly the digital processing algorithms for this automatic detection and classification, as well as the automatic process required for surface and bottom line detection, which is necessary to determine the exploration range. These algorithms are implemented within the ECOPAMPA software, which is the first Argentinean system for marine species identification. Finally, a comparative result over experimental data of ECOPAMPA against Echoview(TM) Software Pty Ltd (formerly Myriax Software Pty Ltd), is carefully examined.
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spelling pubmed-78093802021-01-22 ECOPAMPA: A new tool for automatic fish schools detection and assessment from echo data Villar, Sebastián A. Madirolas, Adrián Cabreira, Ariel G. Rozenfeld, Alejandro Acosta, Gerardo G. Heliyon Research Article Accurate identification of aquatic organisms and their numerical abundance calculation using echo detection techniques remains a great challenge for marine researchers. A software architecture for echo data processing is presented in this article. Within it, it is discussed how to obtain energetic, morphometric and bathymetric fish school descriptors to accurately identify different fish-species. To accomplish this task it was necessary to have a development platform that allowed reading echo data from a particular echosounder, to detect fish aggregations and then to calculate fish school descriptors that would be used for fish-species identification, in an automatic way. This article also describes thoroughly the digital processing algorithms for this automatic detection and classification, as well as the automatic process required for surface and bottom line detection, which is necessary to determine the exploration range. These algorithms are implemented within the ECOPAMPA software, which is the first Argentinean system for marine species identification. Finally, a comparative result over experimental data of ECOPAMPA against Echoview(TM) Software Pty Ltd (formerly Myriax Software Pty Ltd), is carefully examined. Elsevier 2021-01-06 /pmc/articles/PMC7809380/ /pubmed/33490675 http://dx.doi.org/10.1016/j.heliyon.2021.e05906 Text en © 2021 Published by Elsevier Ltd. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Villar, Sebastián A.
Madirolas, Adrián
Cabreira, Ariel G.
Rozenfeld, Alejandro
Acosta, Gerardo G.
ECOPAMPA: A new tool for automatic fish schools detection and assessment from echo data
title ECOPAMPA: A new tool for automatic fish schools detection and assessment from echo data
title_full ECOPAMPA: A new tool for automatic fish schools detection and assessment from echo data
title_fullStr ECOPAMPA: A new tool for automatic fish schools detection and assessment from echo data
title_full_unstemmed ECOPAMPA: A new tool for automatic fish schools detection and assessment from echo data
title_short ECOPAMPA: A new tool for automatic fish schools detection and assessment from echo data
title_sort ecopampa: a new tool for automatic fish schools detection and assessment from echo data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809380/
https://www.ncbi.nlm.nih.gov/pubmed/33490675
http://dx.doi.org/10.1016/j.heliyon.2021.e05906
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