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Reaction prediction via atomistic simulation: from quantum mechanics to machine learning
It is an ultimate goal in chemistry to predict reaction without recourse to experiment. Reaction prediction is not just the reaction rate determination of known reactions but, more broadly, the reaction exploration to identify new reaction routes. This review briefly overviews the theory on chemical...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809518/ https://www.ncbi.nlm.nih.gov/pubmed/33490920 http://dx.doi.org/10.1016/j.isci.2020.102013 |
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author | Kang, Pei-Lin Liu, Zhi-Pan |
author_facet | Kang, Pei-Lin Liu, Zhi-Pan |
author_sort | Kang, Pei-Lin |
collection | PubMed |
description | It is an ultimate goal in chemistry to predict reaction without recourse to experiment. Reaction prediction is not just the reaction rate determination of known reactions but, more broadly, the reaction exploration to identify new reaction routes. This review briefly overviews the theory on chemical reaction and the current methods for computing/estimating reaction rate and exploring reaction space. We particularly focus on the atomistic simulation methods for reaction exploration, which are benefited significantly by recently emerged machine learning potentials. We elaborate the stochastic surface walking global pathway sampling based on the global neural network (SSW-NN) potential, developed in our group since 2013, which can explore complex reactions systems unbiasedly and automatedly. Two examples, molecular reaction and heterogeneous catalytic reactions, are presented to illustrate the current status for reaction prediction using SSW-NN. |
format | Online Article Text |
id | pubmed-7809518 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-78095182021-01-22 Reaction prediction via atomistic simulation: from quantum mechanics to machine learning Kang, Pei-Lin Liu, Zhi-Pan iScience Review It is an ultimate goal in chemistry to predict reaction without recourse to experiment. Reaction prediction is not just the reaction rate determination of known reactions but, more broadly, the reaction exploration to identify new reaction routes. This review briefly overviews the theory on chemical reaction and the current methods for computing/estimating reaction rate and exploring reaction space. We particularly focus on the atomistic simulation methods for reaction exploration, which are benefited significantly by recently emerged machine learning potentials. We elaborate the stochastic surface walking global pathway sampling based on the global neural network (SSW-NN) potential, developed in our group since 2013, which can explore complex reactions systems unbiasedly and automatedly. Two examples, molecular reaction and heterogeneous catalytic reactions, are presented to illustrate the current status for reaction prediction using SSW-NN. Elsevier 2020-12-30 /pmc/articles/PMC7809518/ /pubmed/33490920 http://dx.doi.org/10.1016/j.isci.2020.102013 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Review Kang, Pei-Lin Liu, Zhi-Pan Reaction prediction via atomistic simulation: from quantum mechanics to machine learning |
title | Reaction prediction via atomistic simulation: from quantum mechanics to machine learning |
title_full | Reaction prediction via atomistic simulation: from quantum mechanics to machine learning |
title_fullStr | Reaction prediction via atomistic simulation: from quantum mechanics to machine learning |
title_full_unstemmed | Reaction prediction via atomistic simulation: from quantum mechanics to machine learning |
title_short | Reaction prediction via atomistic simulation: from quantum mechanics to machine learning |
title_sort | reaction prediction via atomistic simulation: from quantum mechanics to machine learning |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809518/ https://www.ncbi.nlm.nih.gov/pubmed/33490920 http://dx.doi.org/10.1016/j.isci.2020.102013 |
work_keys_str_mv | AT kangpeilin reactionpredictionviaatomisticsimulationfromquantummechanicstomachinelearning AT liuzhipan reactionpredictionviaatomisticsimulationfromquantummechanicstomachinelearning |