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Reaction prediction via atomistic simulation: from quantum mechanics to machine learning

It is an ultimate goal in chemistry to predict reaction without recourse to experiment. Reaction prediction is not just the reaction rate determination of known reactions but, more broadly, the reaction exploration to identify new reaction routes. This review briefly overviews the theory on chemical...

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Detalles Bibliográficos
Autores principales: Kang, Pei-Lin, Liu, Zhi-Pan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809518/
https://www.ncbi.nlm.nih.gov/pubmed/33490920
http://dx.doi.org/10.1016/j.isci.2020.102013
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author Kang, Pei-Lin
Liu, Zhi-Pan
author_facet Kang, Pei-Lin
Liu, Zhi-Pan
author_sort Kang, Pei-Lin
collection PubMed
description It is an ultimate goal in chemistry to predict reaction without recourse to experiment. Reaction prediction is not just the reaction rate determination of known reactions but, more broadly, the reaction exploration to identify new reaction routes. This review briefly overviews the theory on chemical reaction and the current methods for computing/estimating reaction rate and exploring reaction space. We particularly focus on the atomistic simulation methods for reaction exploration, which are benefited significantly by recently emerged machine learning potentials. We elaborate the stochastic surface walking global pathway sampling based on the global neural network (SSW-NN) potential, developed in our group since 2013, which can explore complex reactions systems unbiasedly and automatedly. Two examples, molecular reaction and heterogeneous catalytic reactions, are presented to illustrate the current status for reaction prediction using SSW-NN.
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spelling pubmed-78095182021-01-22 Reaction prediction via atomistic simulation: from quantum mechanics to machine learning Kang, Pei-Lin Liu, Zhi-Pan iScience Review It is an ultimate goal in chemistry to predict reaction without recourse to experiment. Reaction prediction is not just the reaction rate determination of known reactions but, more broadly, the reaction exploration to identify new reaction routes. This review briefly overviews the theory on chemical reaction and the current methods for computing/estimating reaction rate and exploring reaction space. We particularly focus on the atomistic simulation methods for reaction exploration, which are benefited significantly by recently emerged machine learning potentials. We elaborate the stochastic surface walking global pathway sampling based on the global neural network (SSW-NN) potential, developed in our group since 2013, which can explore complex reactions systems unbiasedly and automatedly. Two examples, molecular reaction and heterogeneous catalytic reactions, are presented to illustrate the current status for reaction prediction using SSW-NN. Elsevier 2020-12-30 /pmc/articles/PMC7809518/ /pubmed/33490920 http://dx.doi.org/10.1016/j.isci.2020.102013 Text en © 2020 The Author(s) http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Review
Kang, Pei-Lin
Liu, Zhi-Pan
Reaction prediction via atomistic simulation: from quantum mechanics to machine learning
title Reaction prediction via atomistic simulation: from quantum mechanics to machine learning
title_full Reaction prediction via atomistic simulation: from quantum mechanics to machine learning
title_fullStr Reaction prediction via atomistic simulation: from quantum mechanics to machine learning
title_full_unstemmed Reaction prediction via atomistic simulation: from quantum mechanics to machine learning
title_short Reaction prediction via atomistic simulation: from quantum mechanics to machine learning
title_sort reaction prediction via atomistic simulation: from quantum mechanics to machine learning
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7809518/
https://www.ncbi.nlm.nih.gov/pubmed/33490920
http://dx.doi.org/10.1016/j.isci.2020.102013
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