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Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank

The ability to analyze human specimens is the pillar of modern-day translational research. To enhance the research availability of relevant clinical specimens, we developed the Living BioBank (LBB) solution, which allows for just-in-time capture and delivery of phenotyped surplus laboratory medicine...

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Autores principales: Alekseyenko, Alexander V, Hamidi, Bashir, Faith, Trevor D, Crandall, Keith A, Powers, Jennifer G, Metts, Christopher L, Madory, James E, Carroll, Steven L, Obeid, Jihad S, Lenert, Leslie A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7810447/
https://www.ncbi.nlm.nih.gov/pubmed/33166379
http://dx.doi.org/10.1093/jamia/ocaa236
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author Alekseyenko, Alexander V
Hamidi, Bashir
Faith, Trevor D
Crandall, Keith A
Powers, Jennifer G
Metts, Christopher L
Madory, James E
Carroll, Steven L
Obeid, Jihad S
Lenert, Leslie A
author_facet Alekseyenko, Alexander V
Hamidi, Bashir
Faith, Trevor D
Crandall, Keith A
Powers, Jennifer G
Metts, Christopher L
Madory, James E
Carroll, Steven L
Obeid, Jihad S
Lenert, Leslie A
author_sort Alekseyenko, Alexander V
collection PubMed
description The ability to analyze human specimens is the pillar of modern-day translational research. To enhance the research availability of relevant clinical specimens, we developed the Living BioBank (LBB) solution, which allows for just-in-time capture and delivery of phenotyped surplus laboratory medicine specimens. The LBB is a system-of-systems integrating research feasibility databases in i2b2, a real-time clinical data warehouse, and an informatics system for institutional research services management (SPARC). LBB delivers deidentified clinical data and laboratory specimens. We further present an extension to our solution, the Living µBiome Bank, that allows the user to request and receive phenotyped specimen microbiome data. We discuss the details of the implementation of the LBB system and the necessary regulatory oversight for this solution. The conducted institutional focus group of translational investigators indicates an overall positive sentiment towards potential scientific results generated with the use of LBB. Reference implementation of LBB is available at https://LivingBioBank.musc.edu.
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spelling pubmed-78104472021-01-25 Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank Alekseyenko, Alexander V Hamidi, Bashir Faith, Trevor D Crandall, Keith A Powers, Jennifer G Metts, Christopher L Madory, James E Carroll, Steven L Obeid, Jihad S Lenert, Leslie A J Am Med Inform Assoc Case Report The ability to analyze human specimens is the pillar of modern-day translational research. To enhance the research availability of relevant clinical specimens, we developed the Living BioBank (LBB) solution, which allows for just-in-time capture and delivery of phenotyped surplus laboratory medicine specimens. The LBB is a system-of-systems integrating research feasibility databases in i2b2, a real-time clinical data warehouse, and an informatics system for institutional research services management (SPARC). LBB delivers deidentified clinical data and laboratory specimens. We further present an extension to our solution, the Living µBiome Bank, that allows the user to request and receive phenotyped specimen microbiome data. We discuss the details of the implementation of the LBB system and the necessary regulatory oversight for this solution. The conducted institutional focus group of translational investigators indicates an overall positive sentiment towards potential scientific results generated with the use of LBB. Reference implementation of LBB is available at https://LivingBioBank.musc.edu. Oxford University Press 2020-11-09 /pmc/articles/PMC7810447/ /pubmed/33166379 http://dx.doi.org/10.1093/jamia/ocaa236 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the American Medical Informatics Association. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Case Report
Alekseyenko, Alexander V
Hamidi, Bashir
Faith, Trevor D
Crandall, Keith A
Powers, Jennifer G
Metts, Christopher L
Madory, James E
Carroll, Steven L
Obeid, Jihad S
Lenert, Leslie A
Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank
title Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank
title_full Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank
title_fullStr Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank
title_full_unstemmed Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank
title_short Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank
title_sort each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living biobank
topic Case Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7810447/
https://www.ncbi.nlm.nih.gov/pubmed/33166379
http://dx.doi.org/10.1093/jamia/ocaa236
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