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Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank
The ability to analyze human specimens is the pillar of modern-day translational research. To enhance the research availability of relevant clinical specimens, we developed the Living BioBank (LBB) solution, which allows for just-in-time capture and delivery of phenotyped surplus laboratory medicine...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7810447/ https://www.ncbi.nlm.nih.gov/pubmed/33166379 http://dx.doi.org/10.1093/jamia/ocaa236 |
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author | Alekseyenko, Alexander V Hamidi, Bashir Faith, Trevor D Crandall, Keith A Powers, Jennifer G Metts, Christopher L Madory, James E Carroll, Steven L Obeid, Jihad S Lenert, Leslie A |
author_facet | Alekseyenko, Alexander V Hamidi, Bashir Faith, Trevor D Crandall, Keith A Powers, Jennifer G Metts, Christopher L Madory, James E Carroll, Steven L Obeid, Jihad S Lenert, Leslie A |
author_sort | Alekseyenko, Alexander V |
collection | PubMed |
description | The ability to analyze human specimens is the pillar of modern-day translational research. To enhance the research availability of relevant clinical specimens, we developed the Living BioBank (LBB) solution, which allows for just-in-time capture and delivery of phenotyped surplus laboratory medicine specimens. The LBB is a system-of-systems integrating research feasibility databases in i2b2, a real-time clinical data warehouse, and an informatics system for institutional research services management (SPARC). LBB delivers deidentified clinical data and laboratory specimens. We further present an extension to our solution, the Living µBiome Bank, that allows the user to request and receive phenotyped specimen microbiome data. We discuss the details of the implementation of the LBB system and the necessary regulatory oversight for this solution. The conducted institutional focus group of translational investigators indicates an overall positive sentiment towards potential scientific results generated with the use of LBB. Reference implementation of LBB is available at https://LivingBioBank.musc.edu. |
format | Online Article Text |
id | pubmed-7810447 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-78104472021-01-25 Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank Alekseyenko, Alexander V Hamidi, Bashir Faith, Trevor D Crandall, Keith A Powers, Jennifer G Metts, Christopher L Madory, James E Carroll, Steven L Obeid, Jihad S Lenert, Leslie A J Am Med Inform Assoc Case Report The ability to analyze human specimens is the pillar of modern-day translational research. To enhance the research availability of relevant clinical specimens, we developed the Living BioBank (LBB) solution, which allows for just-in-time capture and delivery of phenotyped surplus laboratory medicine specimens. The LBB is a system-of-systems integrating research feasibility databases in i2b2, a real-time clinical data warehouse, and an informatics system for institutional research services management (SPARC). LBB delivers deidentified clinical data and laboratory specimens. We further present an extension to our solution, the Living µBiome Bank, that allows the user to request and receive phenotyped specimen microbiome data. We discuss the details of the implementation of the LBB system and the necessary regulatory oversight for this solution. The conducted institutional focus group of translational investigators indicates an overall positive sentiment towards potential scientific results generated with the use of LBB. Reference implementation of LBB is available at https://LivingBioBank.musc.edu. Oxford University Press 2020-11-09 /pmc/articles/PMC7810447/ /pubmed/33166379 http://dx.doi.org/10.1093/jamia/ocaa236 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the American Medical Informatics Association. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Case Report Alekseyenko, Alexander V Hamidi, Bashir Faith, Trevor D Crandall, Keith A Powers, Jennifer G Metts, Christopher L Madory, James E Carroll, Steven L Obeid, Jihad S Lenert, Leslie A Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank |
title | Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank |
title_full | Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank |
title_fullStr | Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank |
title_full_unstemmed | Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank |
title_short | Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank |
title_sort | each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living biobank |
topic | Case Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7810447/ https://www.ncbi.nlm.nih.gov/pubmed/33166379 http://dx.doi.org/10.1093/jamia/ocaa236 |
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