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Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma

Hepatocellular carcinoma (HCC) is a heterogeneous malignancy closely related to metabolic reprogramming. We investigated how CTNNB1 mutation regulates the HCC metabolic phenotype and thus affects the prognosis of HCC. We obtained the mRNA expression profiles and clinicopathological data from The Can...

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Autores principales: Huo, Junyu, Wu, Liqun, Zang, Yunjin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7812275/
https://www.ncbi.nlm.nih.gov/pubmed/33300278
http://dx.doi.org/10.1111/jcmm.16181
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author Huo, Junyu
Wu, Liqun
Zang, Yunjin
author_facet Huo, Junyu
Wu, Liqun
Zang, Yunjin
author_sort Huo, Junyu
collection PubMed
description Hepatocellular carcinoma (HCC) is a heterogeneous malignancy closely related to metabolic reprogramming. We investigated how CTNNB1 mutation regulates the HCC metabolic phenotype and thus affects the prognosis of HCC. We obtained the mRNA expression profiles and clinicopathological data from The Cancer Genome Atlas (TCGA), the International Cancer Genomics Consortium (ICGC) and the Gene Expression Omnibus database (GSE14520 and GSE116174). We conducted gene set enrichment analysis on HCC patients with and without mutant CTNNB1 through TCGA dataset. The Kaplan‐Meier analysis and univariate Cox regression analysis assisted in screening metabolic genes related to prognosis, and the prognosis model was constructed using the Lasso and multivariate Cox regression analysis. The prognostic model showed good prediction performance in both the training cohort (TCGA) and the validation cohorts (ICGC, GSE14520, GSE116174), and the high‐risk group presented obviously poorer overall survival compared with low‐risk group. Cox regression analysis indicated that the risk score can be used as an independent predictor for the overall survival of HCC. The immune infiltration in different risk groups was also evaluated in this study to explore underlying mechanisms. This study is also the first to describe an metabolic prognostic model associated with CTNNB1 mutations and could be implemented for determining the prognoses of individual patients in clinical practice.
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spelling pubmed-78122752021-01-22 Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma Huo, Junyu Wu, Liqun Zang, Yunjin J Cell Mol Med Original Articles Hepatocellular carcinoma (HCC) is a heterogeneous malignancy closely related to metabolic reprogramming. We investigated how CTNNB1 mutation regulates the HCC metabolic phenotype and thus affects the prognosis of HCC. We obtained the mRNA expression profiles and clinicopathological data from The Cancer Genome Atlas (TCGA), the International Cancer Genomics Consortium (ICGC) and the Gene Expression Omnibus database (GSE14520 and GSE116174). We conducted gene set enrichment analysis on HCC patients with and without mutant CTNNB1 through TCGA dataset. The Kaplan‐Meier analysis and univariate Cox regression analysis assisted in screening metabolic genes related to prognosis, and the prognosis model was constructed using the Lasso and multivariate Cox regression analysis. The prognostic model showed good prediction performance in both the training cohort (TCGA) and the validation cohorts (ICGC, GSE14520, GSE116174), and the high‐risk group presented obviously poorer overall survival compared with low‐risk group. Cox regression analysis indicated that the risk score can be used as an independent predictor for the overall survival of HCC. The immune infiltration in different risk groups was also evaluated in this study to explore underlying mechanisms. This study is also the first to describe an metabolic prognostic model associated with CTNNB1 mutations and could be implemented for determining the prognoses of individual patients in clinical practice. John Wiley and Sons Inc. 2020-12-09 2021-01 /pmc/articles/PMC7812275/ /pubmed/33300278 http://dx.doi.org/10.1111/jcmm.16181 Text en © 2020 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Huo, Junyu
Wu, Liqun
Zang, Yunjin
Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma
title Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma
title_full Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma
title_fullStr Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma
title_full_unstemmed Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma
title_short Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma
title_sort development and validation of a ctnnb1‐associated metabolic prognostic model for hepatocellular carcinoma
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7812275/
https://www.ncbi.nlm.nih.gov/pubmed/33300278
http://dx.doi.org/10.1111/jcmm.16181
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