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Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma
Hepatocellular carcinoma (HCC) is a heterogeneous malignancy closely related to metabolic reprogramming. We investigated how CTNNB1 mutation regulates the HCC metabolic phenotype and thus affects the prognosis of HCC. We obtained the mRNA expression profiles and clinicopathological data from The Can...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7812275/ https://www.ncbi.nlm.nih.gov/pubmed/33300278 http://dx.doi.org/10.1111/jcmm.16181 |
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author | Huo, Junyu Wu, Liqun Zang, Yunjin |
author_facet | Huo, Junyu Wu, Liqun Zang, Yunjin |
author_sort | Huo, Junyu |
collection | PubMed |
description | Hepatocellular carcinoma (HCC) is a heterogeneous malignancy closely related to metabolic reprogramming. We investigated how CTNNB1 mutation regulates the HCC metabolic phenotype and thus affects the prognosis of HCC. We obtained the mRNA expression profiles and clinicopathological data from The Cancer Genome Atlas (TCGA), the International Cancer Genomics Consortium (ICGC) and the Gene Expression Omnibus database (GSE14520 and GSE116174). We conducted gene set enrichment analysis on HCC patients with and without mutant CTNNB1 through TCGA dataset. The Kaplan‐Meier analysis and univariate Cox regression analysis assisted in screening metabolic genes related to prognosis, and the prognosis model was constructed using the Lasso and multivariate Cox regression analysis. The prognostic model showed good prediction performance in both the training cohort (TCGA) and the validation cohorts (ICGC, GSE14520, GSE116174), and the high‐risk group presented obviously poorer overall survival compared with low‐risk group. Cox regression analysis indicated that the risk score can be used as an independent predictor for the overall survival of HCC. The immune infiltration in different risk groups was also evaluated in this study to explore underlying mechanisms. This study is also the first to describe an metabolic prognostic model associated with CTNNB1 mutations and could be implemented for determining the prognoses of individual patients in clinical practice. |
format | Online Article Text |
id | pubmed-7812275 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-78122752021-01-22 Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma Huo, Junyu Wu, Liqun Zang, Yunjin J Cell Mol Med Original Articles Hepatocellular carcinoma (HCC) is a heterogeneous malignancy closely related to metabolic reprogramming. We investigated how CTNNB1 mutation regulates the HCC metabolic phenotype and thus affects the prognosis of HCC. We obtained the mRNA expression profiles and clinicopathological data from The Cancer Genome Atlas (TCGA), the International Cancer Genomics Consortium (ICGC) and the Gene Expression Omnibus database (GSE14520 and GSE116174). We conducted gene set enrichment analysis on HCC patients with and without mutant CTNNB1 through TCGA dataset. The Kaplan‐Meier analysis and univariate Cox regression analysis assisted in screening metabolic genes related to prognosis, and the prognosis model was constructed using the Lasso and multivariate Cox regression analysis. The prognostic model showed good prediction performance in both the training cohort (TCGA) and the validation cohorts (ICGC, GSE14520, GSE116174), and the high‐risk group presented obviously poorer overall survival compared with low‐risk group. Cox regression analysis indicated that the risk score can be used as an independent predictor for the overall survival of HCC. The immune infiltration in different risk groups was also evaluated in this study to explore underlying mechanisms. This study is also the first to describe an metabolic prognostic model associated with CTNNB1 mutations and could be implemented for determining the prognoses of individual patients in clinical practice. John Wiley and Sons Inc. 2020-12-09 2021-01 /pmc/articles/PMC7812275/ /pubmed/33300278 http://dx.doi.org/10.1111/jcmm.16181 Text en © 2020 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Huo, Junyu Wu, Liqun Zang, Yunjin Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma |
title | Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma |
title_full | Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma |
title_fullStr | Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma |
title_full_unstemmed | Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma |
title_short | Development and validation of a CTNNB1‐associated metabolic prognostic model for hepatocellular carcinoma |
title_sort | development and validation of a ctnnb1‐associated metabolic prognostic model for hepatocellular carcinoma |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7812275/ https://www.ncbi.nlm.nih.gov/pubmed/33300278 http://dx.doi.org/10.1111/jcmm.16181 |
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