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KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models—II: model description, implementation and testing

New knowledge on soil structure highlights its importance for hydrology and soil organic matter (SOM) stabilization, which however remains neglected in many wide used models. We present here a new model, KEYLINK, in which soil structure is integrated with the existing concepts on SOM pools, and elem...

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Autores principales: Flores, Omar, Deckmyn, Gaby, Curiel Yuste, Jorge, Javaux, Mathieu, Uvarov, Alexei, van der Linde, Sietse, De Vos, Bruno, Vereecken, Harry, Jiménez, Juan, Vinduskova, Olga, Schnepf, Andrea
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7812927/
https://www.ncbi.nlm.nih.gov/pubmed/33520468
http://dx.doi.org/10.7717/peerj.10707
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author Flores, Omar
Deckmyn, Gaby
Curiel Yuste, Jorge
Javaux, Mathieu
Uvarov, Alexei
van der Linde, Sietse
De Vos, Bruno
Vereecken, Harry
Jiménez, Juan
Vinduskova, Olga
Schnepf, Andrea
author_facet Flores, Omar
Deckmyn, Gaby
Curiel Yuste, Jorge
Javaux, Mathieu
Uvarov, Alexei
van der Linde, Sietse
De Vos, Bruno
Vereecken, Harry
Jiménez, Juan
Vinduskova, Olga
Schnepf, Andrea
author_sort Flores, Omar
collection PubMed
description New knowledge on soil structure highlights its importance for hydrology and soil organic matter (SOM) stabilization, which however remains neglected in many wide used models. We present here a new model, KEYLINK, in which soil structure is integrated with the existing concepts on SOM pools, and elements from food web models, that is, those from direct trophic interactions among soil organisms. KEYLINK is, therefore, an attempt to integrate soil functional diversity and food webs in predictions of soil carbon (C) and soil water balances. We present a selection of equations that can be used for most models as well as basic parameter intervals, for example, key pools, functional groups’ biomasses and growth rates. Parameter distributions can be determined with Bayesian calibration, and here an example is presented for food web growth rate parameters for a pine forest in Belgium. We show how these added equations can improve the functioning of the model in describing known phenomena. For this, five test cases are given as simulation examples: changing the input litter quality (recalcitrance and carbon to nitrogen ratio), excluding predators, increasing pH and changing initial soil porosity. These results overall show how KEYLINK is able to simulate the known effects of these parameters and can simulate the linked effects of biopore formation, hydrology and aggregation on soil functioning. Furthermore, the results show an important trophic cascade effect of predation on the complete C cycle with repercussions on the soil structure as ecosystem engineers are predated, and on SOM turnover when predation on fungivore and bacterivore populations are reduced. In summary, KEYLINK shows how soil functional diversity and trophic organization and their role in C and water cycling in soils should be considered in order to improve our predictions on C sequestration and C emissions from soils.
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spelling pubmed-78129272021-01-28 KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models—II: model description, implementation and testing Flores, Omar Deckmyn, Gaby Curiel Yuste, Jorge Javaux, Mathieu Uvarov, Alexei van der Linde, Sietse De Vos, Bruno Vereecken, Harry Jiménez, Juan Vinduskova, Olga Schnepf, Andrea PeerJ Computational Biology New knowledge on soil structure highlights its importance for hydrology and soil organic matter (SOM) stabilization, which however remains neglected in many wide used models. We present here a new model, KEYLINK, in which soil structure is integrated with the existing concepts on SOM pools, and elements from food web models, that is, those from direct trophic interactions among soil organisms. KEYLINK is, therefore, an attempt to integrate soil functional diversity and food webs in predictions of soil carbon (C) and soil water balances. We present a selection of equations that can be used for most models as well as basic parameter intervals, for example, key pools, functional groups’ biomasses and growth rates. Parameter distributions can be determined with Bayesian calibration, and here an example is presented for food web growth rate parameters for a pine forest in Belgium. We show how these added equations can improve the functioning of the model in describing known phenomena. For this, five test cases are given as simulation examples: changing the input litter quality (recalcitrance and carbon to nitrogen ratio), excluding predators, increasing pH and changing initial soil porosity. These results overall show how KEYLINK is able to simulate the known effects of these parameters and can simulate the linked effects of biopore formation, hydrology and aggregation on soil functioning. Furthermore, the results show an important trophic cascade effect of predation on the complete C cycle with repercussions on the soil structure as ecosystem engineers are predated, and on SOM turnover when predation on fungivore and bacterivore populations are reduced. In summary, KEYLINK shows how soil functional diversity and trophic organization and their role in C and water cycling in soils should be considered in order to improve our predictions on C sequestration and C emissions from soils. PeerJ Inc. 2021-01-15 /pmc/articles/PMC7812927/ /pubmed/33520468 http://dx.doi.org/10.7717/peerj.10707 Text en © 2021 Flores et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Computational Biology
Flores, Omar
Deckmyn, Gaby
Curiel Yuste, Jorge
Javaux, Mathieu
Uvarov, Alexei
van der Linde, Sietse
De Vos, Bruno
Vereecken, Harry
Jiménez, Juan
Vinduskova, Olga
Schnepf, Andrea
KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models—II: model description, implementation and testing
title KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models—II: model description, implementation and testing
title_full KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models—II: model description, implementation and testing
title_fullStr KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models—II: model description, implementation and testing
title_full_unstemmed KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models—II: model description, implementation and testing
title_short KEYLINK: towards a more integrative soil representation for inclusion in ecosystem scale models—II: model description, implementation and testing
title_sort keylink: towards a more integrative soil representation for inclusion in ecosystem scale models—ii: model description, implementation and testing
topic Computational Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7812927/
https://www.ncbi.nlm.nih.gov/pubmed/33520468
http://dx.doi.org/10.7717/peerj.10707
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