Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

The COVID-19 pandemic has led to a rapid accumulation of SARS-CoV-2 genomes, enabling genomic epidemiology on local and global scales. Collections of genomes from resources such as GISAID must be subsampled to enable computationally feasible phylogenetic and other analyses. We present genome-sampler...

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Detalles Bibliográficos
Autores principales: Bolyen, Evan, Dillon, Matthew R., Bokulich, Nicholas A., Ladner, Jason T., Larsen, Brendan B., Hepp, Crystal M., Lemmer, Darrin, Sahl, Jason W., Sanchez, Andrew, Holdgraf, Chris, Sewell, Chris, Choudhury, Aakash G., Stachurski, John, McKay, Matthew, Simard, Anthony, Engelthaler, David M., Worobey, Michael, Keim, Paul, Caporaso, J. Gregory
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2020
Materias:
Software Tool Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7814287/
https://www.ncbi.nlm.nih.gov/pubmed/33500774
http://dx.doi.org/10.12688/f1000research.24751.2

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